YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24349817, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.84
Transmembrane Helix	15	35	0.89
Non-Cytoplasmic	36	43	0.86
Transmembrane Helix	44	67	0.87
Cytoplasmic	68	78	0.85
Transmembrane Helix	79	101	0.90
Non-Cytoplasmic	102	140	0.94
Transmembrane Helix	141	161	0.89
Cytoplasmic	162	183	0.91
Transmembrane Helix	184	202	0.90
Non-Cytoplasmic	203	215	0.72
Transmembrane Helix	216	235	0.94
Cytoplasmic	236	249	0.77
Transmembrane Helix	250	269	0.68
Non-Cytoplasmic	270	291	0.63
Transmembrane Helix	292	316	0.78
Cytoplasmic	317	320	0.60
Transmembrane Helix	321	340	0.76
Non-Cytoplasmic	341	345	0.56
Transmembrane Helix	346	368	0.82
Cytoplasmic	369	413	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILQTISRIP FWQKVLTGFI LGALVGVLLG ESATVLKPLG DLFISAIKML VAPLVFCSIV  60
   61 VSITSLGSQT NLKRLSIKTL GMFMLTGTIA SLIGLAVGSL IDMGGTMQLA TTEVRERNIP 120
  121 GFAQVLLDMI PINPFASLAE GKVLQIIVFA ALVGIAINKV GEKAEPLKRT IEAGAEVMFQ 180
  181 LTRMVLKLTP IGVFGLMAWV VGEYGLSTLL PLGKFIAAIY IAALVHMIFV YGGFVKLAGL 240
  241 SPIQFFRKAL PAQLVAFSTS SSFGTLPAST RAVETMGVSK RYSAFVMPLG ATMNMDGCGG 300
  301 IYPAIAAIFI AQIYGIPLDT LDYVMIAVTA TIASVGTAGV PGSAMVMLTV TLGVIGLPLE 360
  361 GIAFIASIDR IIDMIRTTTN VTGDMMTAVV IGKSENELDV EQFNAKDTQA SLA