YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24375057, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.88
Transmembrane Helix	38	58	0.96
Non-Cytoplasmic	59	65	0.70
Transmembrane Helix	66	87	0.82
Cytoplasmic	88	104	0.58
Transmembrane Helix	105	127	0.86
Non-Cytoplasmic	128	133	0.67
Transmembrane Helix	134	157	0.82
Cytoplasmic	158	182	0.64
Transmembrane Helix	183	204	0.87
Non-Cytoplasmic	205	211	0.68
Transmembrane Helix	212	233	0.90
Cytoplasmic	234	241	0.74
Transmembrane Helix	242	262	0.73
Non-Cytoplasmic	263	284	0.73
Transmembrane Helix	285	308	0.88
Cytoplasmic	309	325	0.69
Transmembrane Helix	326	345	0.82
Non-Cytoplasmic	346	361	0.57
Transmembrane Helix	362	382	0.87
Cytoplasmic	383	383	0.21
Transmembrane Helix	384	398	0.60
Non-Cytoplasmic	399	415	0.44
Transmembrane Helix	416	446	0.79
Cytoplasmic	447	588	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPHVSHSAH LFSLRIAHAL NEACVKDRYS FKRFGQDLLA GLTVGIIAIP LAMALAIASG  60
   61 VPPQYGLYTA IVGGFIIAMT GGSRYSVSGP TAAFVVLLYP IAQQFGLAGL LIATVMSGMM 120
  121 LVAMAMLRLG RLILYIPESV TLGFTAGIGV VIATLQLKDF FGLQIEHMPE QYFAKLMALG 180
  181 QALPSLHLPS LFIAAATLAT MLLWPRLKIP VPAHLPAIAL GSILALILNA MGAEIETIGT 240
  241 RFHYQLTDGG IGSGIPAVLP HFEWPWLQTG PNGQAFEFNL AAFQALLPAA FAIAMLGAIE 300
  301 SLLCAVVLDG MTGKRHSANS ELLGQGIGNI IAPFFGGIPA TAAIARSAAN VKAGAQSPIA 360
  361 SMIHALVVLI GLVALAGILA YLPMSAMAAL LLVVAWNMSE APKAVHLLKT APTSDILVFL 420
  421 SCFSLTVIFD MVIAISVGII LAALLFMKEI AEMTKLYDIS SNKRYVDQSL PADWAVLKIN 480
  481 GPLFFAAADR IFAEIASLTQ DKQVIVLYLD GVSILDAGGL AALSKLIEKC KLNQTKLLIT 540
  541 DLQFQPIRTL AKAKIQPVEG VLKFYPTLRE ALTEAPSPEL EATPEATD