YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24375007, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.92
Transmembrane Helix	12	31	0.96
Non-Cytoplasmic	32	49	0.86
Transmembrane Helix	50	71	0.90
Cytoplasmic	72	79	0.78
Transmembrane Helix	80	99	0.93
Non-Cytoplasmic	100	106	0.71
Transmembrane Helix	107	126	0.92
Cytoplasmic	127	145	0.81
Transmembrane Helix	146	165	0.92
Non-Cytoplasmic	166	186	0.89
Transmembrane Helix	187	206	0.94
Cytoplasmic	207	235	0.95
Transmembrane Helix	236	256	0.88
Non-Cytoplasmic	257	272	0.74
Transmembrane Helix	273	293	0.93
Cytoplasmic	294	300	0.83
Transmembrane Helix	301	320	0.93
Non-Cytoplasmic	321	342	0.77
Transmembrane Helix	343	362	0.89
Cytoplasmic	363	374	0.72
Transmembrane Helix	375	396	0.87
Non-Cytoplasmic	397	405	0.83
Transmembrane Helix	406	424	0.94
Cytoplasmic	425	435	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLDKSQQKS SFLPMAIVAA LFFILGFATW LNGSLMPYLK QILQLNPFQA SLILFSFYIA  60
   61 VTFTALPSAW VIRKVGYKNG MALGMGVMMI AGLLFIPAAK TQVFALFLFA QLVMGAGQTL 120
  121 LQTAVNPYVV RLGPEESAAA RVSVMGILNK GAGVIAPLVF SALILDSFKD RIGTTLTQVQ 180
  181 IDEMANGLVL PYLGMAVFIG ILALAVKKSP LPELSNEDEV ADHTDKSQIK AALSHPNLAL 240
  241 GVLALFVYVA VEVIAGDTIG TFALSLGIDH YGVMTSYTMV CMVLGYILGI LLIPRVISQP 300
  301 TALMISAILG LLLTLGILFG DNNSYAIANL LLVPFGGVAL PDTLLLIAFL GLANAIVWPA 360
  361 VWPLALSGMG KLTSTGSALL IMGIAGGAFG PVSWGLMSSA TDMGQQGGYM VMLPCYLFIL 420
  421 FYAVKGHKMR SWSAK