YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24374694, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.89
Transmembrane Helix	9	28	0.93
Non-Cytoplasmic	29	37	0.71
Transmembrane Helix	38	60	0.89
Cytoplasmic	61	79	0.96
Transmembrane Helix	80	103	0.91
Non-Cytoplasmic	104	119	0.92
Transmembrane Helix	120	139	0.93
Cytoplasmic	140	150	0.82
Transmembrane Helix	151	175	0.84
Non-Cytoplasmic	176	182	0.64
Transmembrane Helix	183	202	0.93
Cytoplasmic	203	222	0.94
Transmembrane Helix	223	244	0.91
Non-Cytoplasmic	245	261	0.91
Transmembrane Helix	262	284	0.90
Cytoplasmic	285	306	0.93
Transmembrane Helix	307	331	0.83
Non-Cytoplasmic	332	345	0.93
Transmembrane Helix	346	366	0.94
Cytoplasmic	367	375	0.78
Transmembrane Helix	376	395	0.95
Non-Cytoplasmic	396	402	0.78
Transmembrane Helix	403	422	0.96
Cytoplasmic	423	433	0.90
Transmembrane Helix	434	455	0.89
Non-Cytoplasmic	456	466	0.73
Transmembrane Helix	467	487	0.91
Cytoplasmic	488	501	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRQNIVASY FSQAYVTLIG IVILPLYIKF MGAEAYGLIG FFTLLQAWFS LLDLGLTPTI  60
   61 ARETSRFQSG VLSKLKFKQL YRALSAIFLI IALIGGLCLF YLSDLITNKW LNFNELDDNI 120
  121 VQICVQIMAI SVAFRWMGGV YRGVITGSES IVWLSSFNAI IATIRFIGVF VSMYIFGFTA 180
  181 YVFFVHQLAV AILEFIILFF KAEKIIPRRK DFTEDIGWSF EPIRSILSFA LTIAFTSSVW 240
  241 VFVTQTDKLL LSGLLPLAEY GYFTLAVLVA SAIMVASGPI SNALMPRMVK LYAEDKKDEM 300
  301 LDIYRKATQV VTVIAIPVTT TFVFSAKPLL IAWTGDVLIA EKASPILQLY AIGNGFLVLA 360
  361 AFPFYLQYAI GSLKYHFLGN ILIFVILMPS IYFAASNYGG IGAAWVWLLL NAFMFFFWVS 420
  421 YVHQKLFKGL HIIWLLRDVL SIALPTLMVC YLVSLTSVDL ITKFHNLVYT ISFAFIGFVV 480
  481 ALLASSNARN FIMSRVKNDL E