YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24349286, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.93
Transmembrane Helix	7	33	0.85
Non-Cytoplasmic	34	56	0.90
Transmembrane Helix	57	76	0.95
Cytoplasmic	77	86	0.86
Transmembrane Helix	87	108	0.93
Non-Cytoplasmic	109	113	0.82
Transmembrane Helix	114	132	0.95
Cytoplasmic	133	139	0.88
Transmembrane Helix	140	163	0.91
Non-Cytoplasmic	164	170	0.87
Transmembrane Helix	171	194	0.92
Cytoplasmic	195	211	0.95
Transmembrane Helix	212	234	0.89
Non-Cytoplasmic	235	240	0.76
Transmembrane Helix	241	261	0.88
Cytoplasmic	262	308	0.94
Transmembrane Helix	309	328	0.95
Non-Cytoplasmic	329	334	0.89
Transmembrane Helix	335	359	0.86
Cytoplasmic	360	367	0.74
Transmembrane Helix	368	387	0.89
Non-Cytoplasmic	388	393	0.65
Transmembrane Helix	394	416	0.76
Cytoplasmic	417	429	0.57
Transmembrane Helix	430	449	0.90
Non-Cytoplasmic	450	465	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIATLFCVL FICMFLGMPI AIALGFSSML TILFFSNDSL ASVALKLYES SSEHYTLLAI  60
   61 PFFILSSAFL STGGVARRII DFAMDCVGHI RGGLAMASVM ACMLFAAVSG SSPATVAAIG 120
  121 SIVIVGMVKA GYPEKFASGV ITTSGTLGIL IPPSIVMLVY AAATEVSVAK IFMAGLVPGL 180
  181 LLGFLIMVVI YIVARIKNLP SIPFPGFKKL GVSSAKAIGG LALIFIVLGS IYGGVASPTE 240
  241 ASAVACVYAY FIAVFGYRDI GPLKNVAWRN PNEAIPSAIA RNLGHMVLGL IKTPIDKEIR 300
  301 HVVRDGAKVS IMLLFIIANA MLFAHVLTTE RIPHIIAEYI VGMGLPAWGF LIIVNLLLLA 360
  361 AGNFMEPSAI VLIMAPILFP IATQLGIDPI HLGIIMVVNM EIGMLTPPVG LNLFVTSGIT 420
  421 GRNIGWVIQS VLPWLVFMLA FLMLITYVPQ ISLFLPELLD KLNGY