YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SSTT_SHEON
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.94
Transmembrane Helix	11	33	0.88
Non-Cytoplasmic	34	41	0.82
Transmembrane Helix	42	65	0.86
Cytoplasmic	66	81	0.86
Transmembrane Helix	82	104	0.92
Non-Cytoplasmic	105	142	0.91
Transmembrane Helix	143	163	0.91
Cytoplasmic	164	183	0.92
Transmembrane Helix	184	203	0.93
Non-Cytoplasmic	204	213	0.63
Transmembrane Helix	214	236	0.89
Cytoplasmic	237	292	0.84
Transmembrane Helix	293	316	0.83
Non-Cytoplasmic	317	324	0.64
Transmembrane Helix	325	350	0.86
Cytoplasmic	351	362	0.51
Transmembrane Helix	363	377	0.62
Non-Cytoplasmic	378	408	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQESSFLAK LANGSLVLQI LVGIIAGVAL ASFSHEWAKQ VAFLGSLFVG ALKAIAPILV  60
   61 FILVASSIAN QKKNTQTNMR PIVVLYLLGT FAAALTAVIL SMMFPTTLVL AAGVEGTSPP 120
  121 QGISEVISTL LFKLVDNPVN ALMTGNYIGI LAWGVGLGLA LHHSSDSTKQ VFADVSHGIS 180
  181 QMVHFIIRLA PIGIFGLVAA TFAETGFAAI AGYAQLLAVL LGAMAFIALI INPLIVYVKI 240
  241 KRNPYPLVIR CLRESGMTAF FTRSSAANIP VNMALCEKLK LHEDTYAVSI PLGATINMGG 300
  301 AAITITVLTL AAAHTLGIQV DLLTALLLSV VAAISACGAS GVAGGSLLLI PLACSLFGIS 360
  361 NDVAMQVVAV GFIIGVIQDA AETALNSSTD VIFTAAACEA AENKAKLG