YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24374450, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.82
Transmembrane Helix	7	27	0.84
Cytoplasmic	28	37	0.75
Transmembrane Helix	38	57	0.90
Non-Cytoplasmic	58	67	0.65
Transmembrane Helix	68	89	0.83
Cytoplasmic	90	95	0.80
Transmembrane Helix	96	120	0.83
Non-Cytoplasmic	121	125	0.62
Transmembrane Helix	126	146	0.64
Cytoplasmic	147	157	0.42
Transmembrane Helix	158	181	0.84
Non-Cytoplasmic	182	221	0.50
Transmembrane Helix	222	242	0.80
Cytoplasmic	243	254	0.37
Transmembrane Helix	255	276	0.79
Non-Cytoplasmic	277	282	0.44
Transmembrane Helix	283	306	0.83
Cytoplasmic	307	310	0.46
Transmembrane Helix	311	335	0.88
Non-Cytoplasmic	336	343	0.46
Transmembrane Helix	344	369	0.79
Cytoplasmic	370	378	0.43
Transmembrane Helix	379	403	0.86
Non-Cytoplasmic	404	407	0.45

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHTTYTIGEL ESFLIAIFVL FIGHSINRHV RVFKQYNIPE PIVGGLVVAA VIAFLHFQDI  60
   61 TLAFSLPMQN TLMLMFFSTI GLSANYKLLL SGGKKVFIFL GVASVYIIIQ NAVGVSLASL 120
  121 LGLDPILGLI AGSITLSGGH GTGVAWSQTF AENYGINTLE FAMAAATFGL VMGGIIGGPV 180
  181 AQRLISKHNL VSSYGVGRKH HATHPQLVTY DQLEEDQVTA KTIIETLFVL LFCVAGAKWF 240
  241 TVLVSEYGLN WLKMPDFVYA LFLGVVIANI TEVTRGYKPH TESIDVIGTV ALSLFLSMAL 300
  301 MNLKLWEILD LAIPLLIILV VQTAVLAVFA YFVTFKVMGS NYDAAVITGG HCGFGMGATP 360
  361 TAVMNMGALV SRTGPSPQAF MVVPIVGAFF IDIVNLIVLQ GYLSFIM