YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NHAB_SHEON
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.77
Transmembrane Helix	20	39	0.86
Non-Cytoplasmic	40	41	0.57
Transmembrane Helix	42	63	0.69
Cytoplasmic	64	67	0.58
Transmembrane Helix	68	88	0.73
Non-Cytoplasmic	89	95	0.71
Transmembrane Helix	96	115	0.92
Cytoplasmic	116	124	0.77
Transmembrane Helix	125	145	0.80
Non-Cytoplasmic	146	148	0.59
Transmembrane Helix	149	167	0.86
Cytoplasmic	168	208	0.79
Transmembrane Helix	209	228	0.85
Non-Cytoplasmic	229	244	0.79
Transmembrane Helix	245	267	0.88
Cytoplasmic	268	306	0.89
Transmembrane Helix	307	339	0.81
Non-Cytoplasmic	340	356	0.73
Transmembrane Helix	357	380	0.84
Cytoplasmic	381	395	0.66
Transmembrane Helix	396	418	0.73
Non-Cytoplasmic	419	457	0.81
Transmembrane Helix	458	476	0.86
Cytoplasmic	477	484	0.69
Transmembrane Helix	485	505	0.93
Non-Cytoplasmic	506	533	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPMTMSQAFI GNFLGNSPKW YKIAILSFLI INPILFFYVS PFVAGWVLVL EFIFTLAMAL  60
   61 KCYPLQPGGL LAIEAVAIGM TSASQVLHEI EANLEVLLLL VFMVAGIYFM KQLLLFAFTK 120
  121 MITKVRSKIL VSLLFCLASA FLSAFLDALT VIAVIITVAV GFYSIYHKVA SGKDFSADHD 180
  181 HTSENKNEEG EDQLNEAELE SFRGFLRNLL MHAGVGTALG GVCTMVGEPQ NLIIAAQANW 240
  241 QFGEFAIRMS PVTVPVFIAG ILTCYIVEKF RIFGYGAQLP DAVHKILCDY DAHEDARRTN 300
  301 KDKMKLIVQA FIGVWLIAGL ALHLASVGLI GLSVIILATA FNGITDEHAL GKAFEEALPF 360
  361 TALLAVFFSV VAVIIDQQLF APVIQWALNH EGNTQLVIFY IANGLLSMVS DNVFVGTVYI 420
  421 NEVKAALLNG QITRDQFDLL AVAINTGTNL PSVATPNGQA AFLFLLTSAL APLIRLSYGR 480
  481 MVWMALPYTI VLSIVGVMAI QIGFLEQMTQ YFYDSHAILH HSVKEALAPA TGH