YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24374408, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.65
Transmembrane Helix	8	28	0.80
Non-Cytoplasmic	29	31	0.53
Transmembrane Helix	32	49	0.80
Cytoplasmic	50	55	0.70
Transmembrane Helix	56	74	0.88
Non-Cytoplasmic	75	80	0.66
Transmembrane Helix	81	100	0.92
Cytoplasmic	101	108	0.84
Transmembrane Helix	109	131	0.89
Non-Cytoplasmic	132	149	0.78
Transmembrane Helix	150	169	0.93
Cytoplasmic	170	177	0.73
Transmembrane Helix	178	200	0.85
Non-Cytoplasmic	201	217	0.79
Transmembrane Helix	218	242	0.82
Cytoplasmic	243	297	0.66
Transmembrane Helix	298	318	0.88
Non-Cytoplasmic	319	325	0.49
Transmembrane Helix	326	347	0.93
Cytoplasmic	348	357	0.57
Transmembrane Helix	358	377	0.75
Non-Cytoplasmic	378	379	0.44
Transmembrane Helix	380	399	0.81
Cytoplasmic	400	412	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRLAIPLQG AQMLFVAFGA LVLMPLLTGL DTSVALFTAG IGTLLFQLIT KRQVPIFLAS  60
   61 SFAFIAPILY GVQTWGIPST MGGIMAAGVV YVCLGALVKV RGTDFIHKLL PPVVVGPVII 120
  121 IIGLGLAPVA VNMALGKSGD GSLALVPTNT ALIISLVSLC TTIAVAIFAK GLLKVMPILA 180
  181 GIIVGYGLSL AFGIVDFSVV TAANWIAIPK FVAPEFNWHA IAFMIPVAIA PAVEHIGDIL 240
  241 AISNVTGKDF MKKPGLHRTL TGDGVATIAA AAFGGPPNTT YSEVTGAVTL TRNFDPRIMT 300
  301 WTAITAITLA FVGKLGALMQ TIPVPVMGGI MCLLFGSIAA VGLNTLIRNH VDLSEPRNLS 360
  361 IVGVTLVFGI GGMAFGIGSF SLTGISLCGI VAITMNLLLP ASKHHKQDVA SH