YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24373665, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTLTINNGD NRVNRLKVLD VYSLRLLLTL LMLSGISLSV GISSWLSTRD AKHQIEELFD  60
   61 AQMLQTAKML ELFYHDEADF KHPQSQPQVL HVPDSQVSSF AEKSDALKLA YEHKLAFQIW 120
  121 SEAGQALVFS DNIGREPLTK FEQGYSKRVF EGELWHVFSF LSAKYKVWII TAQQDEVRQE 180
  181 LVSQIMHNAV IVPLIVVPLT LLIVSLLFYI LFRPLKTFER ELMARSPNDL TPLAMSLPKE 240
  241 LVPVRLALNQ YISSIARFIA RERRFSADAA HELKTPLSVI KLHQQGLEGL VGDDPAQHIH 300
  301 LAAIDAGVKH MSHTVEQLLL LARVDSIAEL NVQSYALLPM VEDALNQLMP LITEYEWNID 360
  361 VDAGLILKCD RFYWLVVLKN IIENACKYSP IETEISISAV QVAAGVEIKI ADRGQGMTSE 420
  421 QIANATERFY RVNENEGIGA GLGLSICHHI IGLHQGQLTI ASREQAGLAV TLFLPQ

Type	Start	End	Confidence
Cytoplasmic	1	20	0.58
Transmembrane Helix	21	45	0.81
Non-Cytoplasmic	46	188	0.58
Transmembrane Helix	189	212	0.91
Cytoplasmic	213	476	0.55