YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24347815, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSLQNKLG LTSKILIGMA TGIIFGLILR NLFPDSIFIK DYITDGFLHV IGTIFISSLK  60
   61 MLVVPLVFIS LVCGTCSLSE PSKLGRLGGK TLAFYLFTTV LALVLAVFAA VIVHPGDATL 120
  121 ANEKLNYVAK EAPSFAQVII DMMPTNPVQA MSEGNMLQII IFAVIFGFAI AHLGERGNRI 180
  181 AQLFDDLNNV IMRVVTLVMQ LAPYGVFALM AKLALTLGLE TFGSVVKYFF LVLTLLLIHN 240
  241 FVTYSILLKA FSGLNPLIFI RKMRDVQLFA FSTASSNATL PITIEASEHR LGVDNKIASF 300
  301 TLPLGATINM DGTAIMQGVA TVFIAQVFGI ELSLTDYAAV IVTATLASIG TAGVPGVGLI 360
  361 MLAMVLNQVG LPVEGIALII GVDRLLDMVR TAVNVTGDCV ATVIIAKSEG EFNETVFNNT 420
  421 QAGKIAPSFD EQVHKID

Type	Start	End	Confidence
Cytoplasmic	1	9	0.98
Transmembrane Helix	10	29	0.91
Non-Cytoplasmic	30	50	0.82
Transmembrane Helix	51	74	0.86
Cytoplasmic	75	91	0.84
Transmembrane Helix	92	113	0.94
Non-Cytoplasmic	114	153	0.96
Transmembrane Helix	154	174	0.91
Cytoplasmic	175	193	0.86
Transmembrane Helix	194	215	0.86
Non-Cytoplasmic	216	227	0.79
Transmembrane Helix	228	248	0.89
Cytoplasmic	249	306	0.57
Transmembrane Helix	307	330	0.72
Non-Cytoplasmic	331	336	0.33
Transmembrane Helix	337	366	0.76
Cytoplasmic	367	437	0.62