YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24373291, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKWVKSGSP WIWMTGGAVS ISLIAVLGLL LLIAWRGLSY FWPTTIYQWE LEDSSGVRST  60
   61 LIGEIYDREE VPTERLIAAG QVFKKDPGEF VTRYLVKTGN REFVGLDFRW ILATDIVSRS 120
  121 EPSEVAKLER AKNGNFYGYP VAVIENGKRL ELANDVIEAS LMEHIDRAVA LSDKALKLQK 180
  181 QDIGAINYEI ERLRLKERGY ELDGELTESL KAEFAAAKAA LHQDYLVLEK ELFALREQAA 240
  241 RDSVIVRDMR GVEVELKLDA VLDVTYVNHL SLISKVKHWF VSMGRFLWDD PREANTEGGV 300
  301 FPAIFGTVFM VLVMAVIVTP FGVIAAIYMH EYAKKGPITK IIRIAVINLA GVPSIVYGVF 360
  361 GLGFFVYMMG GTIDQLFYAE ALPAPTFGSP GVIWSALTLA ILTLPVVIVS TEEGLSRIPS 420
  421 AVRQGSLALG ATKAETLWRI VIPMASPAIM TGLILAVARA AGEVAPLMLV GVVKLAPTLP 480
  481 LDFNFPFVHL ERKFMHLGFH IYDVGFQSPN VEAARPLVYA TSFLLVTVIM ALNLTAISVR 540
  541 NHLREKYRSL EH

Type	Start	End	Confidence
Cytoplasmic	1	10	0.89
Transmembrane Helix	11	35	0.89
Non-Cytoplasmic	36	302	0.94
Transmembrane Helix	303	328	0.88
Cytoplasmic	329	343	0.91
Transmembrane Helix	344	368	0.88
Non-Cytoplasmic	369	390	0.87
Transmembrane Helix	391	411	0.90
Cytoplasmic	412	436	0.93
Transmembrane Helix	437	461	0.83
Non-Cytoplasmic	462	516	0.91
Transmembrane Helix	517	539	0.90
Cytoplasmic	540	552	0.93