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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|24347491, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.86
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQIKLYVAN MNCAGCVAKI EKAFAAESNV SARINLADKQ VTVDGKISPD AALAVMDKAG  60
   61 FPAQLIVDAK AAAEEKRIED AAEYKLRMRQ AVAALAVGIP MMLWGLLGGE MMINSPSMQL 120
  121 GWGIMGLITL ALLIGTGRHF YQGMWRALKA KTTNMDTLIV LGTSTAWLYS MVMVLIPSAF 180
  181 PMDTRHVYFE ASVMILGLIN LGHALELKAR GKTSEAVQRL LGLQSSRAIR IGENGDEEVE 240
  241 ISQLKLGDKL RLRPGDRVAL DGVVESGQSL LDEAMLTGEP IPVPKQVGDS LSAGTVNGNG 300
  301 SLVYRVSAGQ RDTRLAKIIA LVQEAQTSKM PIGRLADNIS AVFVPTVVVI ALLAAAIWYL 360
  361 VGPEPALSHA LVVLTSVLII ACPCALGLAT PMSIMVSVGR AAQMGVLVKN GEALQSASKV 420
  421 DCVVLDKTGT VTQGKPEVTD IHWHGEYEQA LSADDKSALL GAIASLEQHS EHPLANAIVS 480
  481 YVKQASIPLP ATEIFTNHQG KGIEGRVNYT DYLVGNQALM TAFKVPPLTV LANSNETSEL 540
  541 DATAHFAKQG KTPIYVAEAG KLVATIAIAD PIKADAKEAI SAIRSQGIRV VLLTGDNPQT 600
  601 AQAVAEQVGI EEVIAGVLPE QKQQHIKALQ QQGHVVAMVG DGINDAPALM SADVGIAMGS 660
  661 GTEVAIESAD MTLLSHQLIV IANLFALSRA TMTNIKQNLF GAFIYNSIGI PVAAGVLYPL 720
  721 TGMLLSPVIA GAAMALSSLT VVTNANRLRQ QKL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle