YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24373135, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEHEAEYET NTQADVGQVV QQLTEVEGEE QAEVFSEILN EAEPGTIALA LESLPLDERY  60
   61 ERWQQVEFSE RVTVLSLMRA DPRMGILKQM PDNEVDLLFA QLSPEDLIEW SDYLPESFTD 120
  121 RALAQMGERQ RQRFELYDQY SENEIGRYTD HQMLVLSDKA TVAQAQRFFR RIELDCNDNL 180
  181 FIVDEADKYL GTVRRYDIFK HEPHEPLISL LSEDSRALTA NTTLLDAAEA IEHSREIELP 240
  241 VIDDAGELIG RVTLRAATAL VREHYEAQLM ATAGMDESDD LFAPILKGAQ RRAVWLGINL 300
  301 LTAFLASATI GLFENVLSQV VALAVLMPIV ASMGGIAGSQ SLTLMIRGMA MGQISAGNLF 360
  361 SLMKNELGIG LVNGTLWAIV IGLVAGWWFA DSIIGIVIGC AILINMAVAA LAGVFVPMIL 420
  421 QRFNQDAALS GSVILTTVTD VVGFFTFLGM ATILYL

Type	Start	End	Confidence
Cytoplasmic	1	292	0.98
Transmembrane Helix	293	313	0.93
Non-Cytoplasmic	314	320	0.80
Transmembrane Helix	321	346	0.86
Cytoplasmic	347	366	0.90
Transmembrane Helix	367	389	0.90
Non-Cytoplasmic	390	393	0.82
Transmembrane Helix	394	419	0.88
Cytoplasmic	420	428	0.87
Transmembrane Helix	429	453	0.86
Non-Cytoplasmic	454	456	0.78