YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24346916, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.93
Transmembrane Helix	33	54	0.88
Non-Cytoplasmic	55	61	0.75
Transmembrane Helix	62	82	0.92
Cytoplasmic	83	87	0.73
Transmembrane Helix	88	109	0.88
Non-Cytoplasmic	110	115	0.72
Transmembrane Helix	116	138	0.89
Cytoplasmic	139	144	0.91
Transmembrane Helix	145	169	0.85
Non-Cytoplasmic	170	178	0.85
Transmembrane Helix	179	200	0.85
Cytoplasmic	201	206	0.78
Transmembrane Helix	207	227	0.89
Non-Cytoplasmic	228	251	0.86
Transmembrane Helix	252	271	0.85
Cytoplasmic	272	304	0.77
Transmembrane Helix	305	322	0.59
Non-Cytoplasmic	323	329	0.38
Transmembrane Helix	330	354	0.77
Cytoplasmic	355	356	0.37
Transmembrane Helix	357	379	0.68
Non-Cytoplasmic	380	392	0.65
Transmembrane Helix	393	418	0.88
Cytoplasmic	419	428	0.63
Transmembrane Helix	429	448	0.94
Non-Cytoplasmic	449	450	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEQLSSTAV PSGSFLNRFF SIQQRGSTVR QEVIAGLTTF LAMVYSVIVV PNMLGKAGFD  60
   61 PGAVFVATCL IAAFGSLLMG LWANLPMAIG CAISLTAFTA FGLVLGQGMS IPVTLGAIFW 120
  121 MGVIFTIVSV TGIRQWVLAN LPKGIAHGTG IGIGLFLLLI ATNSVQLIVA NDAGLPVKLG 180
  181 DINSLPVIAT VVGLAATIGL ERRGVPGGIL LVIIGLSLFG LVFDPSVKYQ GLFALPNLTS 240
  241 EHSLIGQLDI MGALNPVVLP IVLALVMTAI FDATGTIRAV AGQANLLDKD DNIVGGGKAL 300
  301 TSDSVSSMFA GVVGGAPAAV YIESAAGTAA GGKTGLTATI VGVLFLLMVF LAPLSYLVPA 360
  361 YATAPALMYV GLLMLSNVTK LDFNDKVDAM AGLTCAVFII LSCNIVTGIM LGFVTLVIGR 420
  421 IFSGEWRQLK LGVLAITLGL VVFYMGGWAI