YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24372795, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	3	0.41
Transmembrane Helix	4	22	0.86
Non-Cytoplasmic	23	28	0.35
Transmembrane Helix	29	52	0.84
Cytoplasmic	53	61	0.37
Transmembrane Helix	62	79	0.66
Non-Cytoplasmic	80	87	0.54
Transmembrane Helix	88	113	0.86
Cytoplasmic	114	165	0.69
Transmembrane Helix	166	186	0.93
Non-Cytoplasmic	187	193	0.55
Transmembrane Helix	194	214	0.84
Cytoplasmic	215	250	0.69
Transmembrane Helix	251	277	0.80
Non-Cytoplasmic	278	288	0.48
Transmembrane Helix	289	310	0.82
Cytoplasmic	311	325	0.49
Transmembrane Helix	326	340	0.37
Non-Cytoplasmic	341	370	0.67
Transmembrane Helix	371	395	0.88
Cytoplasmic	396	407	0.69
Transmembrane Helix	408	431	0.89
Non-Cytoplasmic	432	432	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNILMSLVGV VVLLAIGFLL SNNKKAINLR TVGGALAIQA AFGGFVLYVP VGKDILKGMS  60
   61 DAVSSVIGFA QNGIGFLFGD LANFKLGFIF AVNVLPVIVF FSSLIAVLYY LGVMQWIIRI 120
  121 IGGGLQKALG TSRTESMSAT ANIFVGQTEA PLVVRPFIPT MTQSELFAVM VGGLASIAGS 180
  181 VLAGYAQMGV PIEFLVAASF MAAPGGLLMA KLMHPETEVA KNDMDELPED PDKPANVLDA 240
  241 AAAGASSGMH LALNVGAMLL AFVGLIAMIN GIIGGVGGWF GVEGLTLELI LGYVFMPLAF 300
  301 LIGVPWNEAL VAGSFIGQKI IVNEFVAYLN FAPYISEAAT ACTSVAAEVV KGSLPLCVAE 360
  361 TQAVMTSRTQ AIVSFALCGF ANLSSIAILL GGLGAMAPNR RHDLAKMGIR AVIAGSLANL 420
  421 MSATIAGLFL AI