YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24372703, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.85
Transmembrane Helix	20	40	0.90
Non-Cytoplasmic	41	46	0.72
Transmembrane Helix	47	67	0.91
Cytoplasmic	68	72	0.64
Transmembrane Helix	73	91	0.83
Non-Cytoplasmic	92	98	0.73
Transmembrane Helix	99	119	0.92
Cytoplasmic	120	130	0.86
Transmembrane Helix	131	153	0.86
Non-Cytoplasmic	154	166	0.68
Transmembrane Helix	167	186	0.92
Cytoplasmic	187	192	0.89
Transmembrane Helix	193	213	0.93
Non-Cytoplasmic	214	237	0.86
Transmembrane Helix	238	262	0.79
Cytoplasmic	263	280	0.91
Transmembrane Helix	281	304	0.79
Non-Cytoplasmic	305	311	0.82
Transmembrane Helix	312	333	0.88
Cytoplasmic	334	341	0.63
Transmembrane Helix	342	363	0.89
Non-Cytoplasmic	364	371	0.80
Transmembrane Helix	372	396	0.89
Cytoplasmic	397	407	0.69
Transmembrane Helix	408	428	0.89
Non-Cytoplasmic	429	429	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEKLFKLKQ NQTSLKQEAM AGLTTFMTMA YIIFVNPMML ADAGMDHGAV FVATCLATAV  60
   61 GCIVMGLMAN YPIALAPGMG LNAFFTYTVV GEMGYSWETA LGAVFLSGIC FLILSLVRIR 120
  121 EWIVNSIPMS LRIGIAAGIG LFLALIGLKS AGIVVASPAT LVTMGDITAF PAVMAVLGFF 180
  181 LIIAMVQRGM KSAVILSILI ITGLGLLFGD VHYNGIVSMP PSIAPTFMQM DLSQVFEVTM 240
  241 LSVVFAFLFV DLFDTSGTLV AVAQRGGFLD ENNRLPRLNR ALTADSLATI AGAALGTSTT 300
  301 TSYIESTAGV SAGGRTGLTA VVVGLLFILA LFVSPLAGMI PAYATAGTLF YVAILMMSGL 360
  361 VHVEWEDLTE AAPVVIVCIL MPLTFSIATG IALGIISYAA IKLLTGRFSD LNIGVLVLAA 420
  421 MFVAKFIYA