YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24372629, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEAINTSLF SPIGDDGMIG ILLILNGLKV TLIVTFFAML LGAVLGVGTT LMKMSSKWYI  60
   61 RFPAELYVGV IRGTPVVVQL VILYFIVLAA LDVDKITAAI IAFGLNSGAY ISEIIRAGIQ 120
  121 AVDKGQTEAA RSLGLSQAMT MKLIILPQAI KNILPALGNE FIVLLKETAV IGFIGGVDLM 180
  181 RAGEIIRSRT FEDSVPLFTC ALIYLFLTYS FTFMLSKFEK RLKQSD

Type	Start	End	Confidence
Non-Cytoplasmic	1	26	0.60
Transmembrane Helix	27	52	0.84
Cytoplasmic	53	67	0.79
Transmembrane Helix	68	88	0.91
Non-Cytoplasmic	89	95	0.64
Transmembrane Helix	96	115	0.75
Cytoplasmic	116	161	0.58
Transmembrane Helix	162	177	0.50
Non-Cytoplasmic	178	194	0.47
Transmembrane Helix	195	215	0.90
Cytoplasmic	216	226	0.54