YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24372509, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.84
Transmembrane Helix	7	27	0.90
Non-Cytoplasmic	28	37	0.77
Transmembrane Helix	38	58	0.89
Cytoplasmic	59	73	0.86
Transmembrane Helix	74	95	0.94
Non-Cytoplasmic	96	136	0.94
Transmembrane Helix	137	157	0.93
Cytoplasmic	158	179	0.89
Transmembrane Helix	180	198	0.91
Non-Cytoplasmic	199	210	0.68
Transmembrane Helix	211	231	0.93
Cytoplasmic	232	244	0.74
Transmembrane Helix	245	265	0.70
Non-Cytoplasmic	266	295	0.68
Transmembrane Helix	296	313	0.69
Cytoplasmic	314	315	0.45
Transmembrane Helix	316	340	0.72
Non-Cytoplasmic	341	341	0.39
Transmembrane Helix	342	365	0.66
Cytoplasmic	366	424	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVPLWLQIF VGMVLGILVG VTLGEQASYL KPIGTLFVNT IKMLIVPLVF CSLIVGVTSM  60
   61 EDTAKMGRIG FKSFSFYLCT TAIAISLGLV VGYVIQPGAG VPLLQHEAVN TAKEVPSVMQ 120
  121 TLIDIVPTNP VAALASGQIL QVIVFAVALG IALVLIGDHG KPAIKVFESL AEAMYKLTDM 180
  181 VMKLAPYGVF GLMAWVAGEY GIDMLWPLIK VIIAVYIGCI IHVLGFYSIV LRLFAKLNPL 240
  241 HFFKGISNAM AVAFTTSSSA GTLPASMKCA SEYLGVNKKI SSFVLPLGTT INMDGTALYQ 300
  301 GVTALFVAQA FGIDLTWVDY LTIILTATLA SIGTAGVPGA GLVMLTLVLS TVGLPLEGVA 360
  361 LIAGIDRILD MARTVVNVSG DLVATTVIAK SENELDVEHY NADMVQSAVI AEQNAANESA 420
  421 ATQR