YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24372349, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.88
Transmembrane Helix	13	36	0.87
Cytoplasmic	37	48	0.84
Transmembrane Helix	49	69	0.93
Non-Cytoplasmic	70	99	0.90
Transmembrane Helix	100	118	0.94
Cytoplasmic	119	123	0.87
Transmembrane Helix	124	145	0.89
Non-Cytoplasmic	146	162	0.83
Transmembrane Helix	163	183	0.93
Cytoplasmic	184	196	0.90
Transmembrane Helix	197	219	0.84
Non-Cytoplasmic	220	235	0.88
Transmembrane Helix	236	258	0.86
Cytoplasmic	259	266	0.70
Transmembrane Helix	267	283	0.95
Non-Cytoplasmic	284	289	0.75
Transmembrane Helix	290	311	0.93
Cytoplasmic	312	319	0.90
Transmembrane Helix	320	342	0.89
Non-Cytoplasmic	343	349	0.75
Transmembrane Helix	350	371	0.93
Cytoplasmic	372	408	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVSELRFAL DTFYFLISGA LVMWMAAGFA MLEAGLVRSK NTTEILTKNV VLYAIACVMY  60
   61 LLVGYNIMYV DNAEGGWLPS FGTLIGSQAA DANHALESDF FFQVVFVATA MSIVSGAVAE 120
  121 RMKLWAFLVF SVVMTGIIYP VEGYWTWGKG FIASLGFVDF AGSGIVHMTG AAAAIAGVLL 180
  181 LGARKGKYGP NGQVNPIPGS NLPMATLGMF ILWMGWFGFN GGSQLMVSDA ANASAVAKVF 240
  241 VNTNTAAALG AISALIVCKM IWGKADLTMI LNGILAGLVA ITADPLSPSL LMAGVIGLVA 300
  301 GGLVVFSIVG LDRIKIDDPV GAISVHGVAG FLGLMCVPLS NANATITAQL TGAAIIFAWV 360
  361 FSASFAVWFV LKMTMGIRVS EEEEYNGMDA SDCGIDAYPE FVTVKSAG