YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24346277, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.77
Transmembrane Helix	11	32	0.80
Non-Cytoplasmic	33	54	0.89
Transmembrane Helix	55	77	0.90
Cytoplasmic	78	85	0.93
Transmembrane Helix	86	107	0.91
Non-Cytoplasmic	108	136	0.95
Transmembrane Helix	137	158	0.92
Cytoplasmic	159	191	0.91
Transmembrane Helix	192	215	0.79
Non-Cytoplasmic	216	237	0.87
Transmembrane Helix	238	257	0.94
Cytoplasmic	258	288	0.90
Transmembrane Helix	289	313	0.88
Non-Cytoplasmic	314	331	0.90
Transmembrane Helix	332	353	0.94
Cytoplasmic	354	371	0.87
Transmembrane Helix	372	391	0.94
Non-Cytoplasmic	392	407	0.77
Transmembrane Helix	408	429	0.89
Cytoplasmic	430	465	0.90
Transmembrane Helix	466	484	0.85
Non-Cytoplasmic	485	515	0.86
Transmembrane Helix	516	535	0.95
Cytoplasmic	536	544	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILGLARSWS LTGYAIAVLL VLPLLALLLQ AAQPDEAVFG HLLSTVLPTY IANSLWLILW  60
   61 VSIGSLLLAL PCAWLMARCE FVGRRYLQWA LLLPLAMPAY IVAYVYTDLL DYAGPVQRSL 120
  121 RALFGWSSPQ DYFFPDIRTL GGAACVLSLV LFPYIYLLAR TAFMEQSLNL AHASRIMGCS 180
  181 PWQSFWRLSL PMARPALAVG VALVAMETAA DFATVNYFAV PTLTTAVYDT WLGYGNLTAA 240
  241 AKLSAIILLV VFSLIGVERF ARRKQQLFQK QSRIQAIDLY RLSPMQTLLG LGYCGMLLLL 300
  301 AFVLPSGILL SYAINYFEQS WDPLFWQLSV NSLTLALITS LVCCVIALVL MFIRRVSPRS 360
  361 SDALPSRLAS TGYALPGTVL AIGVLVPLTL LDFAINDIAD WLGMAGPGLL LTGSTVALVF 420
  421 AFCVRFVAIA IGSVESSYKR ISPSLDMVSL TLGQSPRRLL QRVHLPLLTK GLFAGALLVF 480
  481 IESMKELPAA LLLRPIGFEN LATYVFQFVS DEKLEHGALP AIVIVLVGLV PLIYLNRSLE 540
  541 QDNR