YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24346112, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.95
Transmembrane Helix	34	56	0.89
Non-Cytoplasmic	57	85	0.92
Transmembrane Helix	86	108	0.84
Cytoplasmic	109	117	0.92
Transmembrane Helix	118	140	0.92
Non-Cytoplasmic	141	146	0.86
Transmembrane Helix	147	169	0.87
Cytoplasmic	170	184	0.89
Transmembrane Helix	185	208	0.93
Non-Cytoplasmic	209	245	0.93
Transmembrane Helix	246	264	0.92
Cytoplasmic	265	283	0.77
Transmembrane Helix	284	301	0.85
Non-Cytoplasmic	302	307	0.70
Transmembrane Helix	308	327	0.91
Cytoplasmic	328	343	0.82
Transmembrane Helix	344	362	0.94
Non-Cytoplasmic	363	368	0.80
Transmembrane Helix	369	389	0.94
Cytoplasmic	390	404	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKNLINWID ARIPMTATYN RHVGQYATPT NFNFWYFFGS LAMLVLVNQL LTGIWLTMNY  60
   61 VPTAEGAFAS VEYIMRDVEY GWLLRYMHST GASAFFVVIY LHMFRGLIYG SYQKPRELLW 120
  121 LFGMLIFLVL MAEAFMGYLL PWGQMSYWGA QVIISLFGAI PVIGDDLTLW IRGDYVISGA 180
  181 TLNRFFALHV IALPLVLVVL VFLHLIALHE VGSNNPDGIE IKKNKDENGW PVDGIPFHPY 240
  241 YTVKDIMGVA GFLIVFCYVL FFIPEGGGYF LEKPNFEAAN PMKTPEHIAP VWYFTPFYAI 300
  301 LRAVPDKLGG VIMMGLSIGV LFVLPWLDRC KVKSVRYRST LHKLNIAQFA VSFIVLGYLG 360
  361 VVPASPTLTI VAQVFTFTYF GFFVALWVYS KNEKTKPVPA RLTH