YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24372011, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATATTVKKP RPKKIEQKSQ PKIYTFEWKG VNRDGQKTSG ELRGASAAEI RSQLKSQGVN  60
   61 PKTVRKQSAA LFKLGDPKIT PMDIAMVTRQ IATMLAAGVP LVTTIELLGR GHEKVKMREL 120
  121 LATILSEIQS GIPLSDALRP HRRYFDDLYV DLVAAGEHSG SLDVVFDRIA TYREKSEALK 180
  181 SKIKKAMFYP AAVVIVAILV TALLLLFVVP QFEDIFKGFG AELPAFTQLV LQISRGLQSS 240
  241 WYIFLGAIVA GVFLFVRAHR NSQIVRDRVD EAVLKIPAIG PILHKGAMAR FARTLATTFA 300
  301 AGVPLIDGLE SAAGASGNAV YRKAILKIRQ EVMAGMQMNV AMRTTGLFPD MLIQMVMIGE 360
  361 ESGSLDNMLN KVSTIYEMQV DDAVDGLSSL IEPIMMVVIG TVVGGLIVAM YLPIFQMGKV 420
  421 VGG

Type	Start	End	Confidence
Cytoplasmic	1	186	0.87
Transmembrane Helix	187	209	0.93
Non-Cytoplasmic	210	238	0.94
Transmembrane Helix	239	258	0.93
Cytoplasmic	259	393	0.66
Transmembrane Helix	394	415	0.92
Non-Cytoplasmic	416	423	0.42