YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24371693, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	3	0.76
Transmembrane Helix	4	21	0.75
Cytoplasmic	22	31	0.81
Transmembrane Helix	32	56	0.84
Non-Cytoplasmic	57	61	0.62
Transmembrane Helix	62	79	0.53
Cytoplasmic	80	85	0.38
Transmembrane Helix	86	111	0.86
Non-Cytoplasmic	112	165	0.42
Transmembrane Helix	166	188	0.89
Cytoplasmic	189	193	0.45
Transmembrane Helix	194	213	0.68
Non-Cytoplasmic	214	251	0.75
Transmembrane Helix	252	276	0.86
Cytoplasmic	277	288	0.56
Transmembrane Helix	289	307	0.89
Non-Cytoplasmic	308	343	0.72
Transmembrane Helix	344	368	0.89
Cytoplasmic	369	383	0.73
Transmembrane Helix	384	403	0.95
Non-Cytoplasmic	404	406	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTIMSCIGI AVLVFIGYLF SENKRQIKFK TIAGALALQI LLGAFVMFVP AGVTIIEAMS  60
   61 SGVNSVIAFS NSGLTFVFGD LANYKLGFVF VINVLCVVIF ISALISVLYY LKVMQFIINI 120
  121 IGGGLSKVLG TSKAESLSAT ANIFVGPIEA PSMVRPLVKN MTRSELFAVM TGGLASVAGG 180
  181 TMVGYINLGI DPKYILTACF MTAPAGLLFA KLLCPQTEHN LVNNDNKIED ADQPKGLLEA 240
  241 ITDGSLMGMN QVITVTALLV SFVAIIALLN GIIGSIGNLF SIDKLTLEMI IGYLLSPLAF 300
  301 LMGVPWSEAI PAASIIGQKI AINEFVAYIS FLEVSNTLSD KTQAIVVFSL CGFANIGSLA 360
  361 MVVGGIAAMC PDKRELITQI GPRVLLAAIL ANLMSGTIAG ALVSLM