YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24371602, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.96
Transmembrane Helix	28	48	0.84
Non-Cytoplasmic	49	58	0.77
Transmembrane Helix	59	78	0.92
Cytoplasmic	79	86	0.79
Transmembrane Helix	87	105	0.94
Non-Cytoplasmic	106	111	0.78
Transmembrane Helix	112	131	0.94
Cytoplasmic	132	149	0.90
Transmembrane Helix	150	171	0.89
Non-Cytoplasmic	172	176	0.81
Transmembrane Helix	177	198	0.93
Cytoplasmic	199	228	0.98
Transmembrane Helix	229	250	0.90
Non-Cytoplasmic	251	256	0.78
Transmembrane Helix	257	278	0.95
Cytoplasmic	279	296	0.92
Transmembrane Helix	297	315	0.94
Non-Cytoplasmic	316	341	0.89
Transmembrane Helix	342	360	0.95
Cytoplasmic	361	375	0.81
Transmembrane Helix	376	396	0.90
Non-Cytoplasmic	397	408	0.78
Transmembrane Helix	409	431	0.86
Cytoplasmic	432	441	0.86
Transmembrane Helix	442	460	0.95
Non-Cytoplasmic	461	481	0.87
Transmembrane Helix	482	503	0.93
Cytoplasmic	504	516	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTPVDAPKW PRQIPYIIAS EACERFSFYG MRNILTPFLM TALLLSIPEE LRGAVAKDVF  60
   61 HSFVIGVYFF PLLGGWIADR FFGKYNTILW LSLIYCVGHA FLAIFEHSVQ GFYTGLFLIA 120
  121 LGSGGIKPLV SSFMGDQFDQ SNKSLAQKAF DMFYFTINFG SFFASLSMPL LLKNFGAAVA 180
  181 FGIPGVLMFV ATVFFWLGRK RYIHMPPEPK DPHGFLPVIR SALLTKVEGK GNIGLVLALI 240
  241 GGVSAAYALV NIPTLGIVAG LCCAMVLVMG FVGAGASLQL ERARKSHPDA AVDGVRSVLR 300
  301 ILVLFALVTP FWSLFDQKAS TWILQANDMV KPQWFEPAMM QALNPLLVML LIPFNNFVLY 360
  361 PAIERMGVKL TALRKMGAGI AITGLSWIVV GTIQLMMDGG SALSIFWQIL PYALLTFGEV 420
  421 LVSATGLEFA YSQAPKAMKG TIMSFWTLSV TVGNLWVLLA NVSVKSPTVT EQIVQTGMSV 480
  481 TAFQMFFFAG FAILAAIVFA LYARSYQMQD HYRQAT