YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23308852, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.96
Transmembrane Helix	42	61	0.91
Non-Cytoplasmic	62	67	0.75
Transmembrane Helix	68	93	0.82
Cytoplasmic	94	108	0.96
Transmembrane Helix	109	133	0.87
Non-Cytoplasmic	134	138	0.94
Transmembrane Helix	139	159	0.92
Cytoplasmic	160	169	0.82
Transmembrane Helix	170	192	0.92
Non-Cytoplasmic	193	209	0.89
Transmembrane Helix	210	230	0.94
Cytoplasmic	231	247	0.87
Transmembrane Helix	248	270	0.90
Non-Cytoplasmic	271	280	0.88
Transmembrane Helix	281	303	0.88
Cytoplasmic	304	316	0.81
Transmembrane Helix	317	339	0.78
Non-Cytoplasmic	340	347	0.56
Transmembrane Helix	348	369	0.84
Cytoplasmic	370	392	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNVDIESIL NIDRYQYTER CRMTNSTQTR AKPARISFLD KYIPLWIILA MAFGLFLGRS  60
   61 VSGLSGFLGA MEVGGISLPI ALGLLVMMYP PLAKVRYDKT KQIATDKHLM GVSLILNWVV 120
  121 GPALMFALAW LFLPDQPELR TGLIIVGLAR CIAMVLVWSD MSCGDREATA VLVAINSVFQ 180
  181 VAMFGALGWF YLQVLPSWLG LPTTTAQFSF WSIVTSVLVF LGIPLLAGVF SRIIGEKIKG 240
  241 REWYEQKFLP AISPFALIGL LYTIVLLFSL QGDQIVSQPW AVVRLAIPLV IYFVGMFFIS 300
  301 LIASKLSGMN YAKSASVSFT AAGNNFELAI AVSIGTFGAT SAQAMAGTIG PLIEIPVLVG 360
  361 LVYAMLWLGP KLFPNDPTLP SSARSTSQII NS