YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62390129, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.97
Transmembrane Helix	34	54	0.93
Non-Cytoplasmic	55	71	0.85
Transmembrane Helix	72	91	0.94
Cytoplasmic	92	101	0.79
Transmembrane Helix	102	121	0.94
Non-Cytoplasmic	122	130	0.59
Transmembrane Helix	131	152	0.84
Cytoplasmic	153	159	0.86
Transmembrane Helix	160	182	0.92
Non-Cytoplasmic	183	189	0.83
Transmembrane Helix	190	210	0.94
Cytoplasmic	211	219	0.88
Transmembrane Helix	220	239	0.94
Non-Cytoplasmic	240	247	0.77
Transmembrane Helix	248	267	0.97
Cytoplasmic	268	290	0.92
Transmembrane Helix	291	313	0.86
Non-Cytoplasmic	314	326	0.80
Transmembrane Helix	327	346	0.92
Cytoplasmic	347	355	0.79
Transmembrane Helix	356	377	0.92
Non-Cytoplasmic	378	381	0.83
Transmembrane Helix	382	404	0.88
Cytoplasmic	405	424	0.88
Transmembrane Helix	425	447	0.86
Non-Cytoplasmic	448	453	0.85
Transmembrane Helix	454	476	0.90
Cytoplasmic	477	487	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDKKQDLTS SAAGSAAPQT KAYPAMPLPE KQAWPALIAL CIGFFMILLD QTIVAVSTPA  60
   61 LQADMGASYN EVIWVTSVYL LTFAVPLLVT GRLGDKYGPK NVYVAGMVIF TVSSLACGLA 120
  121 PDMFTLIIAR GVQGLGAALL TPQTMATINR IFAFERRGAA LGVWGSTAGL ASLAGPILGG 180
  181 VITENWGWQW VFYINVPIGV ISVIAVMKYV PEFPPLTRPL DPLSIVLSIV AVFFLVFAFQ 240
  241 EGEGAGWAAW VWIMIVAAFA LFAWFIYQQS RAEKSGNDPL VPLEIFKFRN FSLGNICIMA 300
  301 MGFTVAGTPL PIMLYFQQAH GMNAMEAGFM MVPQALMAAV LSPFVGKLVD RSNPGLMAAL 360
  361 GFSTVAVSIV LLSMVMIFDT GLVWALVSMT LLGIGNAFVW APNSTSTMRD LPHKFMGAGS 420
  421 GVFNTTRQLG SVIGAAAIGA VMQIRLAAGD EGAAFGQALL LAAAVLVIGI VASTMAGKNA 480
  481 HPAPVKP