YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20807317
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYQQEEIMA KPFDWKIMKR LLTYAKPYWF YILIGVIAIL LVTVSNLLRP YLVQQAIDNY  60
   61 INNPHISKEQ AIQGVIRIGS LYIVIITVAF LINYGQVYLI QYTGQKIIFN LRQQIFEHLQ 120
  121 KLSLSFFDRN PVGRLVTRVT NDTDTLNEMY TSVITNLFND VFIIAGIVIA MVSYNLKLAF 180
  181 IALSTTPLIL TGMYIYRKLA SQAYRLVRVR LARINAFLSE HISGMKIVQL FVTENKKMEE 240
  241 FKKINKEYYD ANMRQLTIFA IFRPSMDVIY SLTLALLIWY GGRDIIAGKI EFGVLYAFVN 300
  301 YLQQLFQPIF DISEKYDILQ SAMASAERIF ILLDTKEEVK DPEDPIPLEE VKGKIEFKNV 360
  361 WFSYNGKEWV LKDVSFEVNP GETVAFVGAT GAGKTSIINL LCRFYDIQKG EILIDGIDIR 420
  421 KVRQQDLRKH IGIVLQDVFL FTGDIKSNIR LNNKNITDND IYRVAKYVNA HQFIKKLPEG 480
  481 YNSKVTERGS TLSAGQRQLL AFARALAFNP KILVLDEATA NIDTETERLI QDALEKLTKG 540
  541 RTTLVIAHRL STIQHADKII VLHKGRIREI GTHQELLQKK GLYYNLYMLQ YKDQLSESKI 600
  601 S

Type	Start	End	Confidence
Cytoplasmic	1	27	0.85
Transmembrane Helix	28	48	0.93
Non-Cytoplasmic	49	77	0.80
Transmembrane Helix	78	100	0.83
Cytoplasmic	101	152	0.85
Transmembrane Helix	153	172	0.78
Non-Cytoplasmic	173	177	0.59
Transmembrane Helix	178	196	0.83
Cytoplasmic	197	260	0.70
Transmembrane Helix	261	282	0.55
Non-Cytoplasmic	283	601	0.76