YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17982120, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.99
Transmembrane Helix	38	60	0.91
Non-Cytoplasmic	61	77	0.84
Transmembrane Helix	78	100	0.91
Cytoplasmic	101	109	0.87
Transmembrane Helix	110	129	0.95
Non-Cytoplasmic	130	133	0.88
Transmembrane Helix	134	155	0.93
Cytoplasmic	156	173	0.94
Transmembrane Helix	174	197	0.91
Non-Cytoplasmic	198	222	0.93
Transmembrane Helix	223	243	0.89
Cytoplasmic	244	283	0.92
Transmembrane Helix	284	304	0.88
Non-Cytoplasmic	305	311	0.67
Transmembrane Helix	312	331	0.94
Cytoplasmic	332	341	0.82
Transmembrane Helix	342	362	0.94
Non-Cytoplasmic	363	387	0.91
Transmembrane Helix	388	411	0.83
Cytoplasmic	412	422	0.95
Transmembrane Helix	423	445	0.88
Non-Cytoplasmic	446	451	0.68
Transmembrane Helix	452	473	0.91
Cytoplasmic	474	481	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPVGGGFVP FRKASGGQEQ GLTEQVMAPR RHAARRGVWG WIFFDWAAQP FFTVVTTFIF  60
   61 GPYFISHVAA TPEEGQMAWG YGFAVAGLLI AILSPILGSV ADKTGARKPW IGFFAVLKII 120
  121 CLSLLWFAVP GANLFWVLCA FAIAMVAAEF SIVFNDSMMP RLVAREDIGR VSNIAWGLGY 180
  181 LGGMIVLIFV VFCLAASPET GRTIIGMKPL FGLDPQLGEG ARITGPLAAL WYFIFILPMF 240
  241 FFTPDAAKGE PLRTALRSGL SELKATLAEV RHRSGIVRFL AARMIYQDGV NALLALGGGY 300
  301 AAAMFHWTIT EIGLFGMILN VMAIISCLIA SRLDMRFGSK KVVIGALVLL FFASLGIIST 360
  361 ARDYTLFGLL PFTLEGEGKL FGTAAEHSYL IYGLMIGAAF GPVQASSRSW FARSIKPEES 420
  421 GRYFGLYALA GRATSFMGPF LVASITAISG SAALGMSVLL LFFVAGFALT LITPYPADRL 480
  481 I