YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16804253
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.89
Transmembrane Helix	33	52	0.95
Non-Cytoplasmic	53	59	0.83
Transmembrane Helix	60	83	0.89
Cytoplasmic	84	106	0.86
Transmembrane Helix	107	129	0.87
Non-Cytoplasmic	130	135	0.78
Transmembrane Helix	136	156	0.88
Cytoplasmic	157	169	0.74
Transmembrane Helix	170	187	0.89
Non-Cytoplasmic	188	190	0.66
Transmembrane Helix	191	209	0.88
Cytoplasmic	210	286	0.92
Transmembrane Helix	287	306	0.90
Non-Cytoplasmic	307	309	0.62
Transmembrane Helix	310	331	0.85
Cytoplasmic	332	351	0.93
Transmembrane Helix	352	372	0.94
Non-Cytoplasmic	373	378	0.76
Transmembrane Helix	379	400	0.91
Cytoplasmic	401	407	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMIFDSKAL WKERFSAYTT EVMRYLRYMF NDHLLFVLVI GLGAGIFYYA GWVKTLEPTF  60
   61 PVIPLMVILL TASIAVSPVA TLLKKPDIVY LIVQEKAMDT YFSQAKIASF FMQLYVFVIV 120
  121 LGVCMPMYVE VTKVPYSQFF TLFIVLSMLK AWNIYFGWES MKFEEADTTW MFIRVILNAI 180
  181 LIYIALIAAP YISIPLVLVV LAASYYWLRT KTAKVTLRWE YLVDKEEARM NRFYRLVNLF 240
  241 TDVPHLRGTV RRRSYLDFLY QPIPYAKRKT FAYLFSRTFI RTNEYAGLYI RLTVIAVILL 300
  301 VFVQGFYLSI IFSLLFLYLT GFQFIPMLKH YDAQIMLRLY PINDRYRHRS FIHFLRILLL 360
  361 AQALLFSVIG IAQNGTIGGM IILGINLAFV VIFTFLYAPV RMKKMYE