YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|206710031, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.97
Transmembrane Helix	16	34	0.90
Non-Cytoplasmic	35	54	0.84
Transmembrane Helix	55	79	0.82
Cytoplasmic	80	86	0.88
Transmembrane Helix	87	105	0.91
Non-Cytoplasmic	106	110	0.63
Transmembrane Helix	111	132	0.82
Cytoplasmic	133	150	0.80
Transmembrane Helix	151	172	0.87
Non-Cytoplasmic	173	178	0.80
Transmembrane Helix	179	198	0.94
Cytoplasmic	199	253	0.95
Transmembrane Helix	254	275	0.87
Non-Cytoplasmic	276	289	0.81
Transmembrane Helix	290	312	0.90
Cytoplasmic	313	327	0.76
Transmembrane Helix	328	346	0.92
Non-Cytoplasmic	347	351	0.75
Transmembrane Helix	352	374	0.91
Cytoplasmic	375	385	0.87
Transmembrane Helix	386	408	0.90
Non-Cytoplasmic	409	415	0.84
Transmembrane Helix	416	436	0.94
Cytoplasmic	437	452	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLSHAASS AEKRTNARYW IVVMLFIVTS FNYGDRATLS IAGSEMAKDI GLDPVGMGYV  60
   61 FSAFSWAYVI GQIPGGWLLD RFGSKRVYFW SIFIWSVFTL LQGFVDIFSG FGIIVALFTL 120
  121 RFLVGLAESP SFPGNSRIVA AWFPAQERGT AVAIFNSAQY FATVIFAPIM GWLTHEVGWS 180
  181 HVFFFMGGLG IIISFIWLKV IHEPNNHPGV NKKELEYIAE GGALINMDQK DTKAKVPFSV 240
  241 KWGQIKQLLG SRMMIGVYIG QYCINALTYF FITWFPVYLV QARGMSILKA GFVASVPAVC 300
  301 GFIGGVLGGI ISDWLMRRTG SLNIARKTPI VLGMLLSMVM VFCNYVNVEW MIIGFMALAF 360
  361 FGKGIGALGW AVMADTAPKE ISGLSGGLFN MFGNISGIVT PIAIGYIVGT TGSFNGALIY 420
  421 VGVHALVAII SYLVLVGDIK RIELKPVAGQ LS