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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|42519684, gi|...
Protein type: Transmembrane
Type Confidence: 0.76
Topology Confidence: 0.69
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVPTNQTNN LNEETNQNES TVSITGAKTN DSLIAGVTQG AINVHINNHA TTPLTINHGE  60
   61 QVNVSINDKN NLLSFNVNPT KTSEFDMNRT DTAANKEFTF TYTGSDDGIL SGFDATFPFN 120
  121 ADTTATTQYY EKYGTYPDLT LPVTVTLPNK QSFTQNLPIK INPYEDKVIN EEILHGFIIG 180
  181 PKVIWTPGED GNPGANGVYT EYGANYTGPE PSAKADIPVA QQKDARLMQY AIDWNYGSST 240
  241 NPSLKPLLNV LAHIKFSSGQ RILPSTIKVF KIPSNIKVVA SDGQRISIND YYSKISTLSE 300
  301 DTNFENFLRN SISNDGREIV IDQKGNFTVN GEDYSKNGPY FIQLDTQLDI NKIPDWINTP 360
  361 SSGPSISTPT TNENDWNPSG SGSTANTFTQ TYTNFKLDPT VDRIIKIRFI DENTNQEIPN 420
  421 SAKNIITATN SSVPNPTMDI IKDLEERHYV LDQEATEGKN GSHSENLTNY NIATQNFKLD 480
  481 SLNNSYNSEE INVKNTSPKY YVYLYHETKP QSQTSSVTET INYVCANGTK KGELAALPYT 540
  541 HTVTYTRNGI EDLVTNYIDW NSWMPDSTFN AVNSPIASDS AYSLIDPLVV PAIETNISEN 600
  601 GEITTQNSIP LSYTVNYYAP EKATLHFYDD TDKQDLTAYL LQNNQTAVIN DIYDKADNNS 660
  661 TKQAISFAGV DKVIDFLNSK HYVFSGVSGI GSTSSSDYSK ISYGNFDDDE TQDQNFVLHF 720
  721 KHETEPISDT KEVTETIHYL YEDNSQAAND VKHSVTFTKT GTKDLVTGKE NSKWSAVQTF 780
  781 PEVVSPVISG YTPTQSKIAP ISVDHTSNDI DKTVIYTANK QQATLRFYDD SSKKFIDFAK 840
  841 DLIVTGSSSS PILFTIPKSY DFSNYNFVAV NKGDNPTQTT DSLSGTTLND VTYGKFDTDN 900
  901 TTNQYFIAHF THKISPVNEN KSISEKAILY AENGPRKDNI FKTLNLGNIN FIRTGQKDLV 960
  961 NQQITWDAWN VENKAQNISI SEIIFNVYKL NSQNISQPSS TLKKFELNGH EISPIEFDKK1020
 1021 QDQALIITLP NNFEFLIKVP YVLTENITVI YKDDTTNEIL ERQVLSGQPD TSSQYSTKNT1080
 1081 ITKYLAKNYL LVSDPTNQQT LSFDNTEDPD DQTYVVHFKH QFEEINNSKS IKETINYIYD1140
 1141 NGTEAAPSYT NSIQFVQSGE VDLVTNIRKI KDWTPSISSF SAVKSPIING YTTDHKQIDQ1200
 1201 QFITPNSKDL VFNVVYTAEP VKPTKPVQPI KPMQPTKPVQ PTKPVQPTKP VEPTKPVQPT1260
 1261 KPVQPTKPVE PTKPVQPTKP VEPTKPVQPT KPVQPTKPIE PTKPVKPTKP VEPTKPVKPT1320
 1321 KPVKPTKPVE PIKPVKPTKP VQPTKPVEPI KPVKPTKPVQ PTKPVEPIKP VKPTKPVQPT1380
 1381 KPVKPTKPVE PTKPVQPIKP VQPTKPVQPT KPVEPTKPVE PTKPVRPTKP VEPTKPVKPT1440
 1441 KPVEPTKPVQ PTKPIEPTKP VEPTKPVQTT KPVEPTKPVQ PTKLTISTSL HKSSDKLTQL1500
 1501 THQSYQNSKV SRQNTNNISV QKKKILPQTG TKTTDIGILG LALATAASLL GLISDKVNRK1560
 1561 KHN

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