YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE37658
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKTEATFSL LDEEEERDEV GPSTVLVPGR PSLRSISLSQ APSAPRDLEN GNGQTSCAEL  60
   61 HKLTAGSTTS LSSQSKNAKK VNKFYKKQNE LLENFKNDSE QIEQFNRTRR RTTSKEEDDD 120
  121 ADVIAAIPPP IPEEKAVVAP LVKHIDGTDE PEVVIFDVPR SPRNPRKKPM ERTDTEEKSV 180
  181 DEKKDDESNT AARMANITLA VNFLLMIAKV VASVLSGSMS IISSMVDSVV DITSGLVISL 240
  241 SERMIKKRDP YLYPRGRTRL EPLSLILISV IMGMASIQLI IASVRGIHDG IQFHLYGIGE 300
  301 EPKLNVTITS VVIMVSTVLV KLSLYLFCKR YKEPSVNVLA MDHRNDCISN TVALICAWLG 360
  361 TKYSYYFDPA GAIVVSMYIL YTWVQTGREH LAKLSGKTAE PEFINRIIKV CLDHDARISH 420
  421 IDTVYVYHFG SKFLVEVHIV LDENMILKES HDISETLQSN IESLPEVERA FVHTDYDYDH 480
  481 HPHDEHKIV

Type	Start	End	Confidence
Cytoplasmic	1	193	0.93
Transmembrane Helix	194	215	0.76
Non-Cytoplasmic	216	220	0.55
Transmembrane Helix	221	241	0.79
Cytoplasmic	242	262	0.87
Transmembrane Helix	263	284	0.93
Non-Cytoplasmic	285	305	0.86
Transmembrane Helix	306	325	0.89
Cytoplasmic	326	489	0.70