YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AMT2_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	22	0.79
Transmembrane Helix	23	44	0.73
Cytoplasmic	45	55	0.84
Transmembrane Helix	56	77	0.89
Non-Cytoplasmic	78	99	0.89
Transmembrane Helix	100	121	0.87
Cytoplasmic	122	129	0.77
Transmembrane Helix	130	150	0.93
Non-Cytoplasmic	151	169	0.86
Transmembrane Helix	170	189	0.95
Cytoplasmic	190	204	0.93
Transmembrane Helix	205	225	0.89
Non-Cytoplasmic	226	241	0.81
Transmembrane Helix	242	265	0.88
Cytoplasmic	266	273	0.87
Transmembrane Helix	274	292	0.93
Non-Cytoplasmic	293	298	0.70
Transmembrane Helix	299	319	0.95
Cytoplasmic	320	329	0.85
Transmembrane Helix	330	348	0.93
Non-Cytoplasmic	349	374	0.93
Transmembrane Helix	375	399	0.91
Cytoplasmic	400	431	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYLELNGTK EGLSAAVDDM WVLNATYLVF YMQAGFCMLE AGVVRAKNAK SIIMKSIIDT  60
   61 AIGSLLFWAL GFGLAFGNAD KASNPVIGTS HFFLINYQNL SFFAFQWAFC ATSITIVSGS 120
  121 LAERVHVTSC LVYTIVMSAF IYPLSAHWVW SYNGWLRMIG FNGIIDFSGS IVVHIVGGCI 180
  181 GLVGTYLVGP RIGRFDSESG KPKPLPGHSI TIYTLGAFII WYGFYGFNTG STLGISGGGI 240
  241 AIASRSAVTM TIIACASCAT TLLAIKIKSG KYDVVKSVNS LLGGLVSSAA VCSLIDPWAA 300
  301 FIIGCVTSFV YLGCSHLLIK LRIDDPLDSS AIHLGCGIWG ALSVGLFSTQ ENLSLVLKKS 360
  361 TNVYGLFFGG GFEQLGIQLL GIIIVMAWCF FCASILFTIL KKFHLLRIEP TKELMGIDID 420
  421 SAGGPAYQWD N