YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AMT1_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	40	0.97
Transmembrane Helix	41	63	0.88
Cytoplasmic	64	71	0.81
Transmembrane Helix	72	91	0.94
Non-Cytoplasmic	92	129	0.94
Transmembrane Helix	130	152	0.89
Cytoplasmic	153	159	0.87
Transmembrane Helix	160	181	0.92
Non-Cytoplasmic	182	194	0.87
Transmembrane Helix	195	217	0.90
Cytoplasmic	218	231	0.88
Transmembrane Helix	232	251	0.88
Non-Cytoplasmic	252	261	0.68
Transmembrane Helix	262	284	0.90
Cytoplasmic	285	293	0.80
Transmembrane Helix	294	312	0.95
Non-Cytoplasmic	313	317	0.78
Transmembrane Helix	318	337	0.92
Cytoplasmic	338	348	0.84
Transmembrane Helix	349	372	0.86
Non-Cytoplasmic	373	386	0.96
Transmembrane Helix	387	409	0.91
Cytoplasmic	410	463	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAGEIIKGV AAEITNGSSS SVVQKYLDCA NQVAPDPGNT TWVLLSTILV LGMMPALAFF  60
   61 EAGLLRSKNT LSIITQIMSG IVVLTVMWQA FGYSLTFGPD QKGIIGNLDH AFLINVSYDD 120
  121 CSPNAPNIPA AAYAFFMMMF ANITPLLMTG AFAERVKFKA FIALTVAWEI IVFYPVAHWI 180
  181 WGGGWLHKYF GVLDFAGGIV IHTSAGVSAL VIALYVGRRK DFEKYGGEFP PSNLPLATIG 240
  241 AALLWMGWFG FNAGSALAAG NIATSAVAST QIGGSFSAIV WIILSAAKGK PNTVSVINGV 300
  301 IAGLAGITPA SGYINSQYSI GLGICLGLAS YYSVVLLKHK LHIDDALDVS SVHGLTGIIG 360
  361 SLAIGFCAEL SVNPNGANGA FYGNPKLIGT QLLGVVSVAV WAAAWTWVLL KIIDATIGVK 420
  421 IDESEEELGL DLVEHGEFAY HNISLQGNEN HYSSVINSHD FFK