YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RHGA_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.98
Transmembrane Helix	19	40	0.96
Non-Cytoplasmic	41	71	0.95
Transmembrane Helix	72	91	0.90
Cytoplasmic	92	98	0.75
Transmembrane Helix	99	120	0.88
Non-Cytoplasmic	121	141	0.90
Transmembrane Helix	142	161	0.93
Cytoplasmic	162	167	0.80
Transmembrane Helix	168	187	0.92
Non-Cytoplasmic	188	198	0.76
Transmembrane Helix	199	218	0.94
Cytoplasmic	219	236	0.83
Transmembrane Helix	237	257	0.84
Non-Cytoplasmic	258	265	0.83
Transmembrane Helix	266	288	0.89
Cytoplasmic	289	297	0.83
Transmembrane Helix	298	317	0.90
Non-Cytoplasmic	318	323	0.75
Transmembrane Helix	324	343	0.96
Cytoplasmic	344	357	0.87
Transmembrane Helix	358	378	0.95
Non-Cytoplasmic	379	406	0.95
Transmembrane Helix	407	429	0.94
Cytoplasmic	430	527	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHNDDDHKW VTTKRKEPIF FTVILFIFQI FMIICFAALT GYDTNKNYTG SENPDEFKGG  60
   61 EVQERVNNFY GYFRDINIMI FFGFGFLMTF LRRYGYSALG YTFIISALVS QWSVLLNGFF 120
  121 EAWSHSNKHG EFPSTWEFSM DSLLQGFFCS GSVMISYGAI LGRVTPLHML IMGIIEPIFF 180
  181 FLNVFIGEMN LEAIDVGGGM YIHLFGSVFG LTVAWFLTDR KSKECTDNAP SYSGDNFAMA 240
  241 GTLFLWMMWP SFNAAIAPLG EPQFRAIANT FLSLTGSTVA TFIVSRLFSH LGNKLDMVHV 300
  301 QNSSLAGGVV QGCIAHMNIN PGGAIAMGFI AGTISVCGYL FITPKVQRKL HIQDTCGILN 360
  361 LHCIPGFLGS IAAIFAAIKG LNNPNMYSKV EFEQIFRAGD SQASANLIAT MVSIGLGIVG 420
  421 GLLVGVILLQ LKKIKGLKSK EYYQDSAFWI LPIDYPKDVA TVVALNNAAT SEDTAGGDDE 480
  481 EEGVGKEHGA VEMGKHNRIV QPKQDNKYHK QLPSDDEEED EFKQEPI