YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	WSD1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAEKVMERE IETTPIEPLS PMSHMLSSPN FFIVITFGFK TRCNRSAFVD GINNTLINAP  60
   61 RFSSKMEINY KKKGEPVWIP VKLRVDDHII VPDLEYSNIQ NPDQFVEDYT SNIANIPMDM 120
  121 SKPLWEFHLL NMKTSKAESL AIVKIHHSIG DGMSLMSLLL ACSRKISDPD ALVSNTTATK 180
  181 KPADSMAWWL FVGFWFMIRV TFTTIVEFSK LMLTVCFLED TKNPLMGNPS DGFQSWKVVH 240
  241 RIISFEDVKL IKDTMNMKVN DVLLGMTQAG LSRYLSSKYD GSTAEKKKIL EKLRVRGAVA 300
  301 INLRPATKIE DLADMMAKGS KCRWGNFIGT VIFPLWVKSE KDPLEYIRRA KATMDRKKIS 360
  361 LEAFFFYGII KFTLKFFGGK AVEAFGKRIF GHTSLAFSNV KGPDEEISFF HHPISYIAGS 420
  421 ALVGAQALNI HFISYVDKIV INLAVDTTTI QDPNRLCDDM VEALEIIKSA TQGEIFHKTE 480
  481 V

Type	Start	End	Confidence
Cytoplasmic	1	185	0.54
Transmembrane Helix	186	205	0.58
Non-Cytoplasmic	206	481	0.85