YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE37575
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFSKKKTNK KLKNSGKNCF FFQFSAKYLE FSVNFPRKNS KKKLETIIFY EKNVEKTLFF  60
   61 TKQYFKFFNE KFQFFSNLSN KKFKNTGKKP VFFSNFSNKS IFFAVWGVGL LFVTLINMCA 120
  121 VVGIGVMRYL TKNTYNQIIT LFVGLGVGSL SGSSFYHLLP QAHPSLMDEV DENGVPTHSY 180
  181 LHMAHISILG VYAFFFCDKL IKIILEIRKK NQHIHHRRLS IENPGMTTER SDSTFVTDAG 240
  241 DREEELLRSV LKKGVMSKAD IDETEMMTLE DKSGKSMGDQ AHGICVHDHS IEFRAGDSAI 300
  301 AAVAWMIVFG DGLHNFIDGI SIGAAFAESL HSGLSISLAV LCEEFPHELG DVAILVASGM 360
  361 TLKQALIYNL LSAITCYVGF FIGVGIGELG PDTSKYAFGL AGGMFLYISL ACMMPEMKKA 420
  421 MEEALNVSLR HGIYVLFLQS VGLFSGLTLM YIMARYGESI SI

Type	Start	End	Confidence
Non-Cytoplasmic	1	101	0.97
Transmembrane Helix	102	126	0.92
Cytoplasmic	127	137	0.82
Transmembrane Helix	138	159	0.94
Non-Cytoplasmic	160	180	0.93
Transmembrane Helix	181	201	0.90
Cytoplasmic	202	364	0.89
Transmembrane Helix	365	387	0.91
Non-Cytoplasmic	388	395	0.77
Transmembrane Helix	396	414	0.95
Cytoplasmic	415	432	0.86
Transmembrane Helix	433	454	0.93
Non-Cytoplasmic	455	462	0.90