YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52352511
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	115	0.96
Transmembrane Helix	116	134	0.88
Non-Cytoplasmic	135	146	0.73
Transmembrane Helix	147	168	0.87
Cytoplasmic	169	182	0.74
Transmembrane Helix	183	205	0.80
Non-Cytoplasmic	206	239	0.85
Transmembrane Helix	240	260	0.94
Cytoplasmic	261	267	0.88
Transmembrane Helix	268	288	0.94
Non-Cytoplasmic	289	308	0.89
Transmembrane Helix	309	330	0.86
Cytoplasmic	331	349	0.82
Transmembrane Helix	350	372	0.92
Non-Cytoplasmic	373	399	0.92
Transmembrane Helix	400	421	0.87
Cytoplasmic	422	440	0.83
Transmembrane Helix	441	460	0.94
Non-Cytoplasmic	461	467	0.86
Transmembrane Helix	468	490	0.92
Cytoplasmic	491	520	0.91
Transmembrane Helix	521	542	0.86
Non-Cytoplasmic	543	558	0.84
Transmembrane Helix	559	579	0.82
Cytoplasmic	580	633	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDDLSLRLG GSSKRLHSRK FGDASNEDFA PNNVDLEKEY KASQSNVTTE VYEASSFEEK  60
   61 ASSEKPQYSS FWKKFYYEYV IVDKSILGVS ILDSFMYNQD LKPVEKERRV WSWYNYCYFW 120
  121 LAECFNINTW QIAATGLQLG LNWWQCWITI WIGYGFVGAF VVLASRVGSA YHLSFPISSR 180
  181 ASFGIFFSLW PIINRVVMAI VWYSVQAYIA ATPVSLMLKS IFGKNLQDRI PNHFASPNAT 240
  241 TYEFMCFFIF WVASLPFLLV PPHKIRHLFT VKAVLVPFGS FGFLIWAIRK AHGRIALGSL 300
  301 TDVQPRGSAF SWAFLRSLMG CMANFSTMVI NAPDFSRFSK NPNSALWSQL VCIPLLFSIT 360
  361 CLIGILVTAA GYEIYGVNYW SPLDVLEQFL QTAYNKGTRA GVFLISFVFA VAQLGTNISA 420
  421 NSLSCGTDMS AIFPKFINIR RGSLFCAAMA LCICPWNLMA TSSKFTMALS AYAIFLSSIA 480
  481 GVVCSDYFVV RRGYIKLTHI YSHQKGSFYM YGNRFGINWR ALAAYLCGVA PCLPGFIAEV 540
  541 GAPAITVSDG AMKLYYLSYW VGYGLSFSSY TALCYFFPVP GCPVNNIIKD KGWFQRWIDV 600
  601 EDFEEDWRET IERDNLDDDS ISIYEHEDEK TFI