YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERD6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	58	0.97
Transmembrane Helix	59	82	0.85
Non-Cytoplasmic	83	96	0.82
Transmembrane Helix	97	118	0.89
Cytoplasmic	119	127	0.86
Transmembrane Helix	128	148	0.93
Non-Cytoplasmic	149	155	0.74
Transmembrane Helix	156	174	0.96
Cytoplasmic	175	184	0.79
Transmembrane Helix	185	204	0.93
Non-Cytoplasmic	205	210	0.72
Transmembrane Helix	211	230	0.94
Cytoplasmic	231	289	0.97
Transmembrane Helix	290	312	0.88
Non-Cytoplasmic	313	324	0.77
Transmembrane Helix	325	345	0.90
Cytoplasmic	346	356	0.78
Transmembrane Helix	357	378	0.92
Non-Cytoplasmic	379	389	0.81
Transmembrane Helix	390	414	0.86
Cytoplasmic	415	424	0.79
Transmembrane Helix	425	444	0.92
Non-Cytoplasmic	445	453	0.79
Transmembrane Helix	454	476	0.91
Cytoplasmic	477	496	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERQKSMEKG LLRKSLSIRE RKFPNEDAFL ESGLSRKSPR EVKKPQNDDG ECRVTASVFL  60
   61 STFVAVSGSF CTGCGVGFSS GAQAGITKDL SLSVAEYSMF GSILTLGGLI GAVFSGKVAD 120
  121 VLGRKRTMLF CEFFCITGWL CVALAQNAMW LDCGRLLLGI GVGIFSYVIP VYIAEIAPKH 180
  181 VRGSFVFANQ LMQNCGISLF FIIGNFIPWR LLTVVGLVPC VFHVFCLFFI PESPRWLAKL 240
  241 GRDKECRSSL QRLRGSDVDI SREANTIRDT IDMTENGGET KMSELFQRRY AYPLIIGVGL 300
  301 MFLQQLCGSS GVTYYASSLF NKGGFPSAIG TSVIATIMVP KAMLATVLVD KMGRRTLLMA 360
  361 SCSAMGLSAL LLSVSYGFQS FGILPELTPI FTCIGVLGHI VSFAMGMGGL PWIIMAEIFP 420
  421 MNVKVSAGTL VTVTNWLFGW IITYTFNFML EWNASGMFLI FSMVSASSIV FIYFLVPETK 480
  481 GRSLEEIQAL LNNSVQ