YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|42567964, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.98
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKSKSLAFV IAALSYSFFS LFSSPPKSHY HELFISTSFS DNASVALNLH TLTRRPHVAG  60
   61 TVANAEAAEY VRSVFTSSAL KSHVVAYQVS LTYPVHRSLV LTPTDSAKPI TFLLEQEKLG 120
  121 DNPYANEVMP TFHGYAKSGN VSGPVVYANY GRVEDFVRLK KDMGVNVSGA VVIARYGQIY 180
  181 RGDIVKNAYE AGAVGVVIYT DKRDYGGDEW FPASKWMPPS GVQVGTVYNG LGDPTTPGWA 240
  241 SVDGCERLSD EAVELSGDVP LIPSLPVSAA DAEVILKTVV GDVSDGDVYP VGPGPGVLNL 300
  301 SYIGETVIAK IENVIGVIEG EEEPDRYVIL GNHRDAWTFG AVDPNSGTAV LMEIAQRLDK 360
  361 LQKRGWKPRR TIILCNWDAE EYGLIGSTEW VEENREMLSS RAVAYLNVDC AVSGPGFHAS 420
  421 ATPQLDELIK VAAQEVRDPD NATQTIYESW IGSSDSVVIR RLGGGGSDYA SFVQHVGVPG 480
  481 VDMSFGRGYP VYHSMYDDFT WMEKFGDPMF QRHVAMASVL GLVALRLADE EIIPFNYTSY 540
  541 ALELKKSAED LENEKLGHNI DVSTLIKSIE DLSTAAKHIS LEKEAIKGAL KVRELNDRLM 600
  601 MAERALTDRD GLSERPWYKH LIYGPSKYDD YGSKSFPGVD DAIDNAKKLN TKASWENVQH 660
  661 QIWRVSRAIR HASLVLKGEL I

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle