YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51948452, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLSDPVRR RALARIVLRL NTPLCVLSYV AGIAWFLALA FPPLTQRTYM SENAMGSTMV  60
   61 EEQFVGGDRA RNFARDFAAH RKKPGALPVA WLERAMRSVG LEVYTQSFSR KLPFPDETHE 120
  121 RYMVSGTNVY GILRAPRAAS TESLVLTVPC GPDTTNSQAV GLLLALAAHF RGQIYWAKDI 180
  181 IFLVTEHDLL GTEAWLEAYH DINVTGIQSS PLQGRAGAIQ AAVALELSSD VVTSLDVTVE 240
  241 GLNGQLPNLD LLNLFQTFCQ KGGLLCTLQG KLQPQDWTSL EGPLQGLQTL LLMVLRQASG 300
  301 RPHGPHGLFL RYGVEALTLR GINSFRQYKY DLVAVGKALE GMFRKLNHLL ERLHQSFFFY 360
  361 LLPALSRFVS IGLYMPATGF LLLVLGLKAL ELWMQLHEAG VNPEEAGKAP GPGSPPLATQ 420
  421 SVSLASLMAP LLISQAMGLA LYFLPVLGQH VAAQHFPVAE AEAVVLTLLA IYVAGLALPH 480
  481 NTHRVVSSQV PDRGWMALKL VALIYLALQL GCIALLNFSL GFLLAATMVP AAALTKPHGP 540
  541 RTLYAALLVV TSPAVTLFGS LFLWRELQEV PLSLAEGWQL FLTALAQGVL EHYTYGALLF 600
  601 PILALGLYPC WLLFWNVLFW K

Type	Start	End	Confidence
Cytoplasmic	1	19	0.89
Transmembrane Helix	20	41	0.90
Non-Cytoplasmic	42	363	0.98
Transmembrane Helix	364	387	0.86
Cytoplasmic	388	423	0.89
Transmembrane Helix	424	446	0.83
Non-Cytoplasmic	447	460	0.71
Transmembrane Helix	461	480	0.89
Cytoplasmic	481	500	0.80
Transmembrane Helix	501	526	0.88
Non-Cytoplasmic	527	541	0.76
Transmembrane Helix	542	564	0.92
Cytoplasmic	565	571	0.77
Transmembrane Helix	572	590	0.73
Non-Cytoplasmic	591	596	0.68
Transmembrane Helix	597	619	0.90
Cytoplasmic	620	621	0.79