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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|19311002
Protein type: Globular with Signal Peptide
Type Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNTIPQYFI RIFNLIFSAR RKNFQLALIS GLLFFGSFAI LSTTSYSKKF NYFDDLILKI  60
   61 YDYNYLTNNY NIDYLAKNDP EAYFNVKVQQ IVDEKKQHDL ESKFWSLDTK INDDQATLQI 120
  121 PAYFTYNKPR DNKNLEDSEQ SSKPVEKPLI QPFDPRFTLA MYYYYLDQQM TTAHHDSSSS 180
  181 SSGNSITVPF NWYDWVDMSV LNKYLLAPNK DKPDCSILDA HEDARKIETE KKKMEKLAKQ 240
  241 WDENKRKAEE EKKKAEEDKK KEEEEKKKAE EEEKQRHEQE KQALEEDKKK LEEEKKKIEE 300
  301 EKNKLQEQQQ QQQQEEKAND GNQEHSKFVK RDDEIKMSTS QDKSDSDADR AKIDMTTFFN 360
  361 EAFEKLSDED KASVAKDVED AVKKITQPSS WCVPNAKLSI DHSDKQIVHP GFNVFKSPGR 420
  421 TTPQKAIIAG KSFLYSYAPP PSSILFLTSE GSYSVNVQHS APLLRNGIPE SYLANNNFDV 480
  481 SLNVLQQLHK LKKNHKPDTA KVINDYLLHI PKESFKYDPD SIIFDYTKRL DKGEKLTIKE 540
  541 LKYLQSLEYS KDKVAHGGPP KYFAESRLIG TTVGDHYDWR FFNGVQFGTV DQSLTLHRLI 600
  601 RTWLSFTRKS GITTWIAHGS LLSWYWNGMA FPWDNDIDVQ VPIMDLHKLS LQFNQTIVVE 660
  661 DPEDGFGRYF LDIGSFITLR EKGNGNNNID ARFIDIDTGL YIDITALALS NSETPKSDLA 720
  721 ELPKNFEIKD NNYKPANELL QIYNCRNNHF NSYDELSPLM KSSVEGEIGY IPSRYSTILT 780
  781 REYRSGLSSN SHGGYIFIAK LRLWVKEEDL YYFIKHRDQW TKYHSFNTKL SQDPSNTLLQ 840
  841 DYSYLMSEQE YENLQYSTDL EHDNPFKKTK KPLELKNSEL EKLKHMNESE LLQFLNNDDI 900
  901 LIQFFNAKEF TSFHESEIMQ LTFGKSTAKL MSSAIDFPPI KYEPYLYKLN HDLDTFENKV 960
  961 DRYLALQDAY QQEHNNSPSG GSDNGFMEIE EDLDFAF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle