YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17431999
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.99
Transmembrane Helix	27	48	0.88
Non-Cytoplasmic	49	54	0.78
Transmembrane Helix	55	74	0.96
Cytoplasmic	75	206	0.99
Transmembrane Helix	207	230	0.84
Non-Cytoplasmic	231	258	0.93
Transmembrane Helix	259	281	0.88
Cytoplasmic	282	289	0.76
Transmembrane Helix	290	308	0.94
Non-Cytoplasmic	309	314	0.65
Transmembrane Helix	315	335	0.93
Cytoplasmic	336	348	0.83
Transmembrane Helix	349	367	0.92
Non-Cytoplasmic	368	373	0.88
Transmembrane Helix	374	394	0.93
Cytoplasmic	395	406	0.85
Transmembrane Helix	407	426	0.95
Non-Cytoplasmic	427	569	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPATAVGAR ATDPREERFP PSKRNPLRTL RVTVWASCAV GFAIGAPGTH GQPTHLLILA  60
   61 VGLLLILLPV DWLLRRQLRA GRSLITITGD AIASAAFSGK EKRLRWSEIE SMTVETVQNA 120
  121 PYLAFRLRAA SGTASKRRFR FGRDRSKRIL ALSSFDTADR ERLVDSIQIH LRLRGGMTGT 180
  181 PSMPVNPFKA ERQFEEQLAA LAPRPHLTHA LIALNVLAWL ATLVLGGNPL QTPTDVLFNL 240
  241 GGNAAFEVQQ GEWWRLLSAT FLHAGVLHLA VNMIGLYAAG VTVERIYGPV AYLLIYLGAG 300
  301 LLGSALSLSF AAQHAIGVGA SGAVFGVAGA WLVAIRQYRG RMPETLSKRL LTQIGLFVLY 360
  361 SLVQGLTKPG VDNAAHVGGL IGGCLLACIL PARLDMDRYR RRLPGRAAMA LAATGAGIAV 420
  421 LAMLAPRAAL DHRQFFASAE AVARGFSAVG AAAQATESDQ QAFAAGRLSA RQWVERNHAV 480
  481 HVPALRQATA TLRSARLAQG DPRADLLRDT LLYADLTAEA MELTVMETPE SRDPVSTDPA 540
  541 RLAHVQRQLE AVGERLTRDA DALRRRPFN