YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17547071
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.95
Transmembrane Helix	31	51	0.83
Non-Cytoplasmic	52	68	0.88
Transmembrane Helix	69	92	0.82
Cytoplasmic	93	100	0.88
Transmembrane Helix	101	124	0.85
Non-Cytoplasmic	125	129	0.72
Transmembrane Helix	130	150	0.93
Cytoplasmic	151	159	0.85
Transmembrane Helix	160	182	0.91
Non-Cytoplasmic	183	195	0.83
Transmembrane Helix	196	216	0.95
Cytoplasmic	217	258	0.98
Transmembrane Helix	259	281	0.88
Non-Cytoplasmic	282	292	0.83
Transmembrane Helix	293	314	0.92
Cytoplasmic	315	324	0.88
Transmembrane Helix	325	344	0.96
Non-Cytoplasmic	345	349	0.79
Transmembrane Helix	350	370	0.91
Cytoplasmic	371	376	0.70
Transmembrane Helix	377	399	0.85
Non-Cytoplasmic	400	416	0.81
Transmembrane Helix	417	437	0.92
Cytoplasmic	438	442	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTTPPLGP SAGALPPQSA SGFEEATYRK VSWRLIPFLL LCYVVAYLDR VNVGFAKLQM  60
   61 LNDLKFSETV YGLGAGIFFI GYFLFEVPSN VILHRVGARM WIARIMISWG LISAAMMFVT 120
  121 TPAMFYVMRF LLGLAEAGFF PGIILYLTYW YPAERRGRTT TFFMTAVALS GVIGGPISGW 180
  181 ALKTFGGVYG LAGWQWMFLI EGIPSVVIGL CVLAYLDNRI SHARWLTDEE KALLTRNIAA 240
  241 EEAQKEDAPI AAIMASPRVW LMSLIYFSFV MGLYGVSFWL PTLIKQTGVA DPLSVGLLTA 300
  301 IPYGAAVVAM VLVARSADRT RERRWHIAIP ALAGAIGLVL SAVWHTNTTL AMAALTLGTM 360
  361 GILTTLPLFW SLPTAFLAGT GAAAGIALIN SLGNLAGFLS PYAVGWLKDT TRSTDSGMYL 420
  421 LAASMVLGAL LTLSVPARTV NR