YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19112936, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QEIRNLVSCN LVYSRFFHSA AMGAGLAMFS KFPIIESSMN KYPLNGRPQA FWRGDWYVGK  60
   61 GVATASLQHP SGRIISLFNT HLHAPYGKGA DTYLCHRLSQ AWYISKLLRA AVQRGHIVIA 120
  121 AGDFNIQPLS VPHEIITSYG LVNDAWLSVY PDQVEHPPNR FSMNDKELVE IAGTTCDSRL 180
  181 NTWRENISSK DMDDFVAKRL DYVFHSPSTC EAKNAKVVFL ERVPKLDCSY SDHFAIETVL 240
  241 SIKLQPIPVQ ETRVSYSIID DTLGITYQYM ARERLHMRLR IAHLLISIPL IIGVHVAIAW 300
  301 CDPAWLKVII LFFTVMLTIA AVVNGFCIGL LFGRWEFNGL LEFVAELKEQ KLLCKQYLVD 360
  361 HPLPFAKS

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.48
Transmembrane Helix	16	35	0.56
Cytoplasmic	36	278	0.95
Transmembrane Helix	279	299	0.93
Non-Cytoplasmic	300	308	0.75
Transmembrane Helix	309	332	0.93
Cytoplasmic	333	368	0.96