YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51859522, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.90
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCSQWVAQLG ELVLLVLVTQ AALKPAMPPV IKNQPFNIFW AAPTLFCKDN FDVNMNLQAF  60
   61 NIIPNPFETQ SGSTIAVFYP KELGYYPYFS EDGISFYGGI PQNVNLSEHL RKSANDIANA 120
  121 VSLWRSEGLA VIDWEGWRPQ WDRNWGGRII YKNHSLAFTR HHHPDWAETK VRTVAQQEFE 180
  181 NAGKSLMNVT LTLALEMRPK RLWGFYLYPD CYNYDYRINP EFYTGSCPDD EIFRNDQLMW 240
  241 LWEKSAALYP SIYLSKILKS DINALKFVHF RVREALRIAE KARKDYALPV FIFSRPFYLQ 300
  301 SIEALSEEDL VHTIGESAAL GAAGIILWGG YEYSDTKETC LSLQQTVHGL LGPYALNVTS 360
  361 AAKLCSQSLC NSHGRCIRKT PDSSFYLHMP EDSQKNSVTS KGVNFVISPK SKLKAIVNMK 420
  421 NGFVCHCYYG WHGESCRSHS PNLQKNKVPA TGFNLAVSVG MALFVILMNF FLFPTTMVIF 480
  481 L

Type	Start	End	Confidence
Signal Peptide	1	21	0.91
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	449	0.91
Transmembrane Helix	450	473	0.87
Cytoplasmic	474	481	0.62