YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NAGAB_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQKTVLLLA LVAQVLMLEN GLLRTPPMGW LAWERFRCNI NCEEDPKNCI SERLFMEMAD  60
   61 RLAQDGWRDL GYVYLNIDDC WIGGRDATGR LIPDPKRFPH GIAFLADYAH SLGLKLGIYE 120
  121 DMGKMTCMGY PGTTLDKVEL DAATFAEWKV DMLKLDGCYS TPKERAEGYP KMAAALNATG 180
  181 RPIAFSCSWP AYEGGLPPKV NYTEVAGTCN LWRNYKDIQD SWKSVLSILD WFVKHQDILQ 240
  241 PVSGPGHWND PDMLLIGNFG LSFDESRAQM ALWTVLAAPL FMSTDLRTIS PQNIDILQNP 300
  301 LLIKINQDPL GIQGRLIFKS KSHIEVFKRN LSDDASALVF FSRRTDMPYH FHCSLLELNY 360
  361 PKGSVYEGQN VFTGDIISGL HPETNFTVII NPSGVVMWYL YPVKGLGIYT MMSQL

Type	Start	End	Confidence
Signal Peptide	1	18	0.98
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	415	0.98