YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|24417476
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYYSSFFFL FLFSFLTSFR VSAQDPTYVY HTCQNTANYT SNSTYNNNLK TLLASLSSRN  60
   61 ASYSTGFQNA TVGQAPDRVT GLFNCRGDVS TEVCRRCVSF AVNDTLTRCP NQKEATLYYD 120
  121 ECVLRYSNQN ILSTLITTGG VILVNTRNVT SNQLDLLSDL VLPTLNQAAT VALNSSKKFG 180
  181 TRKNNFTALQ SFYGLVQCTP DLTRQDCSRC LQLVINQIPT DRIGARIINP SCTSRYEIYA 240
  241 FYTESAVPPP PPPPSICTPP VSAPPRSGKD GNSKVLVIAI VVPIIVAVLL FIAGYCFLTR 300
  301 RARKSYYTPS AFAGDDITTA DSLQLDYRTI QTATDDFVES NKIGQGGFGE VYKGTLSDGT 360
  361 EVAVKRLSKS SGQGEVEFKN EVVLVAKLQH RNLVRLLGFC LDGEERVLVY EYVPNKSLDY 420
  421 FLFDPAKKGQ LDWTRRYKII GGVARGILYL HQDSRLTIIH RDLKASNILL DADMNPKIAD 480
  481 FGMARIFGLD QTEENTSRIV GTYGYMSPEY AMHGQYSMKS DVYSFGVLVL EIISGKKNSS 540
  541 FYQTDGAHDL VSYAWGLWSN GRPLELVDPA IVENCQRNEV VRCVHIGLLC VQEDPAERPT 600
  601 LSTIVLMLTS NTVTLPVPRQ PGLFFQSRIG KDPLDTDTTS KSLLGSVDDA SITDIHPR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle