YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51457946
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	97	0.98
Transmembrane Helix	98	116	0.93
Non-Cytoplasmic	117	127	0.69
Transmembrane Helix	128	146	0.96
Cytoplasmic	147	156	0.79
Transmembrane Helix	157	179	0.81
Non-Cytoplasmic	180	184	0.62
Transmembrane Helix	185	205	0.83
Cytoplasmic	206	213	0.70
Transmembrane Helix	214	236	0.88
Non-Cytoplasmic	237	247	0.75
Transmembrane Helix	248	269	0.90
Cytoplasmic	270	279	0.78
Transmembrane Helix	280	301	0.92
Non-Cytoplasmic	302	310	0.75
Transmembrane Helix	311	332	0.88
Cytoplasmic	333	343	0.77
Transmembrane Helix	344	362	0.62
Non-Cytoplasmic	363	368	0.58
Transmembrane Helix	369	392	0.87
Cytoplasmic	393	407	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLSRFIGK QCKLQCSDTL QRPSYGFCVR RSPTHLSMGM RNKDEIGRYN LFINQNQSKT  60
   61 SLVQSPCNRK IVCCEAASNV SGESSSTGMT QYEKIIETLT TLFPLWVILG TIIGIYKPSA 120
  121 VTWLETDLFT LGLGFLMLSM GLTLTFDDFR RCLRNPWTVG VGFLAQYFIK PLLGFTIAMA 180
  181 LKLSAPLATG LILVSCCPGG QASNVATYIS KGNVALSVLM TTCSTVGAIV MTPLLTKLLA 240
  241 GQLVPVDAAG LAISTFQVVL VPTVIGVLSN EFFPKFTSKI VTITPLIGVI LTTLLCASPI 300
  301 GQVADVLKTQ GAQLLLPVAA LHAAAFFLGY QISKFSFGES TSRTISIECG MQSSALGFLL 360
  361 AQKHFTNPLV AVPSAVSVVC MALGGSALAV YWRNQPIPVD DKDDFKE